iqbal-lab-org / pling

Plasmid analysis using rearrangement distances
MIT License
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Add batching #26

Closed babayagaofficial closed 10 months ago

babayagaofficial commented 11 months ago

On large datasets (>1000) snakemake scheduler stalls -- first try to fix with snakemake's internal batching, and if that doesn't work implement own batching