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iqbal-lab-org / pling

Plasmid analysis using rearrangement distances
MIT License
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Complicated overlap fix #27

Closed babayagaofficial closed 8 months ago

babayagaofficial commented 8 months ago

Fixes issue #9 by splitting up matches around overlaps. This works, but code will probably need to be refactored at some point, and ideally further comments added.

leoisl commented 8 months ago

Ok to merge for me, even if it is currently failing CI tests. CI integration tests test pling end-to-end, and this overlap fix did improve the distance calculation between plasmids, thus changed the distance matrix the CI tests expect. We can merge now and then fix the integration tests later.