DCJ calculation workflow

[babayagaofficial]

• [x] hardwired to Murray dataset -- alter to read in filenames from a config file
• [x] reimplement to use dingII (basically done)
• [ ] gurobi ilp to cplex ilp conversion script (add option to use either cplex or gurobi)
• [x] set reasonable default memory requirements for ilp calculation
• [ ] add splits network calculation
• [x] add jaccard check
• [x] add time limit option to ilp calculation step