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Plasmid analysis using rearrangement distances
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DCJ calculation workflow
#3
Closed
babayagaofficial
closed
10 months ago
babayagaofficial
commented
1 year ago
[x] hardwired to Murray dataset -- alter to read in filenames from a config file
[x] reimplement to use dingII (basically done)
[ ] gurobi ilp to cplex ilp conversion script (add option to use either cplex or gurobi)
[x] set reasonable default memory requirements for ilp calculation
[ ] add splits network calculation
[x] add jaccard check
[x] add time limit option to ilp calculation step