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iqbal-lab-org / pling

Plasmid analysis using rearrangement distances
MIT License
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For long ILPs, the GLPK solution might include some unexpected line breaks, making our downstream parsing bugged #32

Closed leoisl closed 7 months ago

leoisl commented 8 months ago

Example:

  4453 x_985_986_0  *              0             0             1 
  4454 x_987_988_0  *              1             0             1 
  4455 x_989_990_0  *              0             0             1 
  4456 x_991_992_0  *              1             0             1 
  4457 x_993_994_0  *              0             0             1 
  4458 x_995_996_0  *              1             0             1 
  4459 x_997_998_0  *              0             0             1 
  4460 x_999_1000_0 *              1             0             1 
  4461 x_1001_1002_0
                    *              0             0             1 
  4462 x_1003_1004_0
                    *              0             0             1 
  4463 x_1005_1006_0
                    *              0             0             1 
  4464 x_1007_1008_0
                    *              0             0             1 
  4465 x_1009_1010_0
                    *              0             0             1
leoisl commented 8 months ago

This makes pling error out when using GLPK on large ILPs

leoisl commented 7 months ago

Closed via https://github.com/iqbal-lab-org/pling/pull/33