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iqbal-lab-org / pling

Plasmid analysis using rearrangement distances
MIT License
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Output SNPs in some form #58

Open babayagaofficial opened 1 month ago

babayagaofficial commented 1 month ago

As we calculate SNPs pairwise anyway, and people like to use SNP distances for various reasons, might be worth adding a flag that saves SNP output in some way. Possible options:

  1. just save nucmer output
  2. write out snp distance for each pair as well as dcj (will be faster as not writing all the nucmer output)