in the above example there is a large overlap between two matches that intuitively ought to break up the two matches into three, and produce integerisation:
ref
1 2 3 4 5 6 7
query
7 1 -3 13 -2 4 5 6 7
furthermore we see that in the integerisation from annotation that there is indeed a duplication
however we get:
ref
1 2 3 4 5 6
query
1 -3 13 -2 4 5 6
ought to try catch large overlaps and treat overlap as a separate block
in the above example there is a large overlap between two matches that intuitively ought to break up the two matches into three, and produce integerisation:
furthermore we see that in the integerisation from annotation that there is indeed a duplication however we get:
ought to try catch large overlaps and treat overlap as a separate block