Add task dl_and_run; rename ena options

iqbal-lab-org / viridian

MIT License

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Closed martinghunt closed 6 months ago

martinghunt commented 6 months ago

Adds a new command line task dl_and_run, to download and run a batch of sequencing runs from the ENA
rename command line options to remove reference to "ena", keeping it more general (the reads are in INSDC, not just ENA)