PTA - Phylogeographic Temporal Analysis

Whole genome or SNP based comparative phylogeographic analysis for co-distributed assemblages of communities. The result of aggregating a bunch of momis and dadis.

Quick installation

PTA requires python 3.9 at the moment.

• Install miniconda and activate conda
• Install PTA inside a clean conda environment:

  conda create -n pta python=3.9
  conda activate pta
  conda install -c conda-forge -c bioconda -c PTA pta

Stuck solving environment

If the conda install takes a very long time you can try changing the solver to libmamba. If you are impatient you should just do this right away because it works.

conda install -n base conda-libmamba-solver
conda config --set solver libmamba

Full installation and usage information is available on the PTA rtfd site