itsmeludo
commented
5 years ago Hi, I couldn't reproduce this. The dependencies for phyloligo are set from a specific version and on. New versions or compilations (different conda builds) might not fit. I would suggest to downgrade the versions of R and R libraries ( conda list rbase; conda install rbase=X.x.x.x=b02²10 for a specific version and build number) this might also be the order of sources in conda look-ups. Trying versions from another source, other builds or versions should solve the problem, which seems linked to conda. Ultimately, phyloligo can be installed by other means as described in the manual, in which you will have more control over dependencies' versions. Hope it helps you solve this. Keep an update as other users might stumble on this over again. Best, ludo
Dear Phyloligo team,
I installed phyloligo with conda , and i have the following error : (base) [dragon2-ctrl0:~/Vale :]$phyloselect.R -d -m -c 0.95 -s 4000 -t BIONJ -f c -w 20 -i GCF_000312505.2.JSD.mat -a GCF_000312505.2.fna -o GCF_000312505.2_conta Erreur : package or namespace load failed for ‘gplots’ in dyn.load(file, DLLpath = DLLpath, ...): impossible de charger l'objet partagé '/home/users/l/c/lcornet/miniconda3/lib/R/library/KernSmooth/libs/KernSmooth.so': libopenblas.so.0: Ne peut ouvrir le fichier d'objet partagé: Aucun fichier ou dossier de ce type De plus : Warning message: le package ‘gplots’ a été compilé avec la version R 3.6.1 Exécution arrêtée
Can you help me ?