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ivadomed / canproco

Code for preprocessing the CanProCo brain and spinal cord dataset
MIT License
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Lesion segmented in brain `sub-edm019` #65

Open plbenveniste opened 1 year ago

plbenveniste commented 1 year ago

Opening this issue about subject sub-edm019. As we can see in the below image, the lesion is segmented in the brainstem while in our case we only focus on spinal cord lesion.

Screen Shot 2023-10-18 at 12 02 17 PM

During analysis of lesions, maybe we should remove lesions above the first vertebral level ? How should we treat this patient for the training of the region-based nnunet model.

Removing it from spinal cord segmentation anyway.

plbenveniste commented 1 year ago

Same problem with subject sub-edm038. Lesion removed from spinal cord seg.

Screen Shot 2023-10-18 at 12 07 24 PM