CanProCo

This repository contains the code used in the different projects of the Canadian Prospective Cohort to Understand Progression in MS (CanProCo).

Table of Contents

• Computing Cross-Sectional Area (CSA)
• nnUNet training
• Dataset analysis of MS lesions
• Building lesion frequency maps
• Using the model for MS lesion segmentation

[!TIP] For manual corrections of spinal cord masks and MS lesion maks, please refer to this repository: manual-correction and its wiki for examples.