Register PSIR/STIR to PAM50 and generate lesion frequency maps

ivadomed / canproco

Code for preprocessing the CanProCo brain and spinal cord dataset

MIT License

4 stars 1 forks source link

Closed valosekj closed 1 year ago

valosekj commented 1 year ago

This PR adds canproco/lesion-mapping folder. The folder contains 3 scripts:

01_register_to_pam50.sh - register STIR/PSIR images to the PAM50 space and bring the GT lesion and spinal cord masks (located under derivatives/labels) to the PAM50 template space
02_generate_lesion_frequency_maps.py - generate the lesion frequency map (LFM) in the PAM50 space
03_lfm_to_png.py - from LFM, generate png images

For details, see README.md.

valosekj commented 1 year ago

@plbenveniste, could you please review this PR? In particular, whether the README.md and the description and help of each script are clear.

plbenveniste commented 1 year ago

Looks good to me !