Curate M12 data - Githubissues

valosekj commented 9 months ago

On 2024-02-23, we received M12 MRI data from Erin. I saved the data to ~/duke/temp/janvalosek/canproco_M12_2024-02-26.

TODO:

[ ] upload the data to git-annex (data is already BIDSified, i.e., the curation process should not be difficult)

plbenveniste commented 7 months ago

In the end, it's not as straight-forward as I expected. There are multiple things to do :

[ ] Copy new images
[ ] Copy updated images (same name as what we have but different array data or different header data)
[ ] Deal with problematic images (sub-cal119_ses-M12_T2star.nii.gz is "broken" : I cannot do file.get_fdata())
[ ] Split MT files into 2 or 3 files depending on how many acquisitions they contain : we know how to split them. (Btw sometimes they contain only 2 acquisitions because the T1w is already a file of its own).
[ ] Split T2star into multiple files sometimes (for example sub-van150_ses-M12_T2star contains 3 acquisitions)

Questions :

What should be done for the splitting of T2star images ?
What should be done the problematic image ?

@jcohenadad @valosekj Any thoughts ? Should we report this in the next meeting with UBC ?

Current code: here

jcohenadad commented 7 months ago

What should be done for the splitting of T2star images ?

I think we can average them, or use RMS, as done in the spine-generic project

What should be done the problematic image ?

Let's see what the UBC team says

Should we report this in the next meeting with UBC?

I don't think we should wait for the next meeting-- can you let the team know about it now?

sandrinebedard commented 7 months ago

I confirm in spine generic we do RMS for T2star

valosekj commented 7 months ago

[ ] Copy updated images

What is meant by "updated images"?

[ ] Deal with problematic images (sub-cal119_ses-M12_T2star.nii.gz is "broken" : I cannot do file.get_fdata())

I can confirm that sub-cal119_ses-M12_T2star.nii.gz is broken and cannot be opened in FSLeyes.

What should be done for the splitting of T2star images ?

For spine-generic, we actually kept the 4D T2star images in the root dataset. And Sandrine is now adding reoriented and root mean squared (across 4th dimension) images to derivatives/data_preprocessed as part of https://github.com/spine-generic/data-multi-subject/pull/159. So maybe we can do the same here, i.e., keep the original 4D T2star?

plbenveniste commented 7 months ago

What is meant by "updated images"?

By this, I mean images which already exist but whose data was changed.

For spine-generic, we actually kept the 4D T2star images in the root dataset. And Sandrine is now adding reoriented and root mean squared (across 4th dimension) images to derivatives/data_preprocessed as part of https://github.com/spine-generic/data-multi-subject/pull/159. So maybe we can do the same here, i.e., keep the original 4D T2star?

After yesterday's discussion during the canproco meeting, we decided to keep both the 4D T2star and 3D T2star with different file names in the same folders. What names should be used ?

for 4D T2star: ...T2star_original.nii.gz
for 3D T2star: ...T2star.nii.gz (their json file should contain the transformations applied)

What are your opinions @jcohenadad @valosekj @NathanMolinier

jcohenadad commented 7 months ago

for 4D T2star: ...T2star_original.nii.gz

that is definitely not 'BIDS friendly'. Someone would have to spend 5min to look at the BIDS doc to figure out what field is appropriate (acq, rec, etc.)

NathanMolinier commented 7 months ago

After yesterday's discussion during the canproco meeting, we decided to keep both the 4D T2star and 3D T2star with different file names in the same folders. What names should be used ?

for 4D T2star: ...T2star_original.nii.gz

for 3D T2star: ...T2star.nii.gz (their json file should contain the transformations applied)

We could use the entities rec-RMS or proc-RMS for the 3D T2star ? If we decide to keep them in the same folder.

plbenveniste commented 6 months ago

Since we recently received a new batch of data containing combined M0-M12, should we move forward with this ? Maybe we could just work on the last version they sent us, which might not have the problems listed here ?

jcohenadad commented 6 months ago

Maybe we could just work on the last version they sent us, which might not have the problems listed here ?

I'd be curious to know how they dealt with this. My gut feeling is that they didn't, and we should send them the averaged T2*w data, which we could call rec-RMS

plbenveniste commented 6 months ago

The modifications were done using the file code/update_M12_data_2024-02-26.py

The following work was done:

I added new data from the new curated M12 dataset
I updated the files which were changed (either their header or their data was changed)
I updated the json files which were changed
for MTS images, they were split in either 2 or 3 files (MTon, MToff and T1w)
for T2star images which included multiple time points, they were average (using RMS) and stored under file name rec-RMS_T2star (this means that both the original 4D T2star and the averaged T2star are stored in the canproco repo)

The file sub-cal119_ses-M12_T2star.nii.gz was corrupted and therefore not added to the git-annex dataset.

The following list details the output of the process:

Details of files

List of files with different data: - sub-mon014_ses-M12_acq-MT_MTS.nii.gz - sub-mon014_ses-M12_T2star.nii.gz - sub-mon014_ses-M12_PSIR.nii.gz - sub-mon014_ses-M12_acq-T1w_MTS.nii.gz - sub-mon014_ses-M12_T2w.nii.gz List of files with different header: - sub-mon014_ses-M12_acq-MT_MTS.nii.gz - sub-mon014_ses-M12_T2star.nii.gz - sub-cal143_ses-M12_T2star.nii.gz List of new files: - sub-van150_ses-M12_T2star.nii.gz - sub-van150_ses-M12_acq-T1w_MTS.nii.gz - sub-van150_ses-M12_T2w.nii.gz - sub-van150_ses-M12_PSIR.nii.gz - sub-van150_ses-M12_acq-MT_MTS.nii.gz - sub-cal140_ses-M12_T2star.nii.gz - sub-cal140_ses-M12_T2w.nii.gz - sub-cal140_ses-M12_STIR.nii.gz - sub-cal140_ses-M12_acq-MT_MTS.nii.gz - sub-tor125_ses-M12_T2w.nii.gz - sub-tor125_ses-M12_T2star.nii.gz - sub-tor125_ses-M12_acq-MToff_MTS.nii.gz - sub-tor125_ses-M12_acq-T1w_MTS.nii.gz - sub-tor125_ses-M12_acq-MTon_MTS.nii.gz - sub-tor125_ses-M12_PSIR.nii.gz - sub-edm183_ses-M12_T2star.nii.gz - sub-edm183_ses-M12_acq-T1w_MTS.nii.gz - sub-edm183_ses-M12_PSIR.nii.gz - sub-edm183_ses-M12_T2w.nii.gz - sub-edm183_ses-M12_acq-MTon_MTS.nii.gz - sub-edm183_ses-M12_acq-MToff_MTS.nii.gz - sub-van222_ses-M12_PSIR.nii.gz - sub-van222_ses-M12_acq-MT_MTS.nii.gz - sub-van222_ses-M12_acq-T1w_MTS.nii.gz - sub-van222_ses-M12_T2star.nii.gz - sub-van222_ses-M12_T2w.nii.gz - sub-edm164_ses-M12_T2star.nii.gz - sub-edm164_ses-M12_acq-T1w_MTS.nii.gz - sub-edm164_ses-M12_acq-MTon_MTS.nii.gz - sub-edm164_ses-M12_PSIR.nii.gz - sub-edm164_ses-M12_acq-MToff_MTS.nii.gz - sub-edm164_ses-M12_T2w.nii.gz - sub-cal200_ses-M12_STIR.nii.gz - sub-cal200_ses-M12_acq-MT_MTS.nii.gz - sub-cal200_ses-M12_T2star.nii.gz - sub-cal200_ses-M12_T2w.nii.gz - sub-van147_ses-M12_acq-MT_MTS.nii.gz - sub-van147_ses-M12_T2w.nii.gz - sub-van147_ses-M12_PSIR.nii.gz - sub-van147_ses-M12_T2star.nii.gz - sub-van147_ses-M12_acq-T1w_MTS.nii.gz - sub-edm178_ses-M12_PSIR.nii.gz - sub-edm178_ses-M12_T2w.nii.gz - sub-edm178_ses-M12_T2star.nii.gz - sub-edm178_ses-M12_acq-MToff_MTS.nii.gz - sub-edm178_ses-M12_acq-T1w_MTS.nii.gz - sub-edm178_ses-M12_acq-MTon_MTS.nii.gz - sub-cal198_ses-M12_acq-MT_MTS.nii.gz - sub-cal198_ses-M12_T2star.nii.gz - sub-cal198_ses-M12_STIR.nii.gz - sub-cal198_ses-M12_T2w.nii.gz - sub-cal191_ses-M12_T2w.nii.gz - sub-cal191_ses-M12_T2star.nii.gz - sub-cal191_ses-M12_STIR.nii.gz - sub-cal191_ses-M12_acq-MT_MTS.nii.gz - sub-cal151_ses-M12_T2star.nii.gz - sub-cal151_ses-M12_STIR.nii.gz - sub-cal151_ses-M12_T2w.nii.gz - sub-cal151_ses-M12_acq-MT_MTS.nii.gz - sub-mon108_ses-M12_acq-T1w_MTS.nii.gz - sub-mon108_ses-M12_T2star.nii.gz - sub-mon108_ses-M12_acq-MT_MTS.nii.gz - sub-mon108_ses-M12_PSIR.nii.gz - sub-mon108_ses-M12_T2w.nii.gz - sub-cal213_ses-M12_acq-MT_MTS.nii.gz - sub-cal213_ses-M12_T2w.nii.gz - sub-cal213_ses-M12_T2star.nii.gz - sub-cal213_ses-M12_STIR.nii.gz - sub-cal131_ses-M12_acq-MT_MTS.nii.gz - sub-cal131_ses-M12_T2star.nii.gz - sub-cal131_ses-M12_STIR.nii.gz - sub-cal131_ses-M12_T2w.nii.gz - sub-van211_ses-M12_PSIR.nii.gz - sub-van211_ses-M12_acq-MT_MTS.nii.gz - sub-van211_ses-M12_T2w.nii.gz - sub-van211_ses-M12_acq-T1w_MTS.nii.gz - sub-van211_ses-M12_T2star.nii.gz - sub-cal210_ses-M12_T2star.nii.gz - sub-cal210_ses-M12_T2w.nii.gz - sub-cal210_ses-M12_acq-MT_MTS.nii.gz - sub-cal210_ses-M12_STIR.nii.gz - sub-edm157_ses-M12_T2star.nii.gz - sub-edm157_ses-M12_PSIR.nii.gz - sub-edm157_ses-M12_acq-T1w_MTS.nii.gz - sub-edm157_ses-M12_T2w.nii.gz - sub-edm157_ses-M12_acq-MToff_MTS.nii.gz - sub-edm157_ses-M12_acq-MTon_MTS.nii.gz - sub-van112_ses-M12_acq-T1w_MTS.nii.gz - sub-van112_ses-M12_acq-MT_MTS.nii.gz - sub-van112_ses-M12_T2star.nii.gz - sub-van112_ses-M12_PSIR.nii.gz - sub-van112_ses-M12_T2w.nii.gz - sub-van219_ses-M12_T2w.nii.gz - sub-van219_ses-M12_T2star.nii.gz - sub-van219_ses-M12_acq-MT_MTS.nii.gz - sub-van219_ses-M12_PSIR.nii.gz - sub-van219_ses-M12_acq-T1w_MTS.nii.gz - sub-edm010_ses-M12_acq-MTon_MTS.nii.gz - sub-edm010_ses-M12_PSIR.nii.gz - sub-edm010_ses-M12_acq-MToff_MTS.nii.gz - sub-edm010_ses-M12_T2star.nii.gz - sub-edm010_ses-M12_acq-T1w_MTS.nii.gz - sub-edm010_ses-M12_T2w.nii.gz - sub-tor147_ses-M12_acq-MTon_MTS.nii.gz - sub-tor147_ses-M12_T2w.nii.gz - sub-tor147_ses-M12_acq-T1w_MTS.nii.gz - sub-tor147_ses-M12_acq-MToff_MTS.nii.gz - sub-tor147_ses-M12_PSIR.nii.gz - sub-tor147_ses-M12_T2star.nii.gz - sub-cal206_ses-M12_T2star.nii.gz - sub-cal206_ses-M12_STIR.nii.gz - sub-cal206_ses-M12_acq-MT_MTS.nii.gz - sub-cal206_ses-M12_T2w.nii.gz - sub-edm181_ses-M12_T2w.nii.gz - sub-edm181_ses-M12_acq-MTon_MTS.nii.gz - sub-edm181_ses-M12_T2star.nii.gz - sub-edm181_ses-M12_acq-MToff_MTS.nii.gz - sub-edm181_ses-M12_acq-T1w_MTS.nii.gz - sub-edm181_ses-M12_PSIR.nii.gz - sub-cal185_ses-M12_acq-MT_MTS.nii.gz - sub-cal185_ses-M12_STIR.nii.gz - sub-cal185_ses-M12_T2w.nii.gz - sub-cal185_ses-M12_T2star.nii.gz - sub-cal214_ses-M12_STIR.nii.gz - sub-cal214_ses-M12_T2w.nii.gz - sub-cal214_ses-M12_T2star.nii.gz - sub-cal214_ses-M12_acq-MT_MTS.nii.gz - sub-van151_ses-M12_T2w.nii.gz - sub-van151_ses-M12_acq-T1w_MTS.nii.gz - sub-van151_ses-M12_T2star.nii.gz - sub-van151_ses-M12_PSIR.nii.gz - sub-van151_ses-M12_acq-MT_MTS.nii.gz - sub-cal209_ses-M12_T2star.nii.gz - sub-cal209_ses-M12_acq-MT_MTS.nii.gz - sub-cal209_ses-M12_T2w.nii.gz - sub-cal209_ses-M12_STIR.nii.gz - sub-van221_ses-M12_PSIR.nii.gz - sub-van221_ses-M12_T2w.nii.gz - sub-van221_ses-M12_acq-T1w_MTS.nii.gz - sub-van221_ses-M12_acq-MT_MTS.nii.gz - sub-van221_ses-M12_T2star.nii.gz - sub-mon139_ses-M12_PSIR.nii.gz - sub-mon139_ses-M12_T2w.nii.gz - sub-mon139_ses-M12_T2star.nii.gz - sub-mon139_ses-M12_acq-T1w_MTS.nii.gz - sub-mon139_ses-M12_acq-MT_MTS.nii.gz - sub-mon064_ses-M12_acq-MT_MTS.nii.gz - sub-mon064_ses-M12_T2w.nii.gz - sub-mon064_ses-M12_PSIR.nii.gz - sub-mon064_ses-M12_acq-T1w_MTS.nii.gz - sub-van172_ses-M12_PSIR.nii.gz - sub-van172_ses-M12_acq-T1w_MTS.nii.gz - sub-van172_ses-M12_T2star.nii.gz - sub-van172_ses-M12_acq-MT_MTS.nii.gz - sub-van172_ses-M12_T2w.nii.gz - sub-edm138_ses-M12_T2star.nii.gz - sub-edm138_ses-M12_acq-T1w_MTS.nii.gz - sub-edm138_ses-M12_T2w.nii.gz - sub-edm138_ses-M12_PSIR.nii.gz - sub-cal197_ses-M12_acq-MT_MTS.nii.gz - sub-cal197_ses-M12_STIR.nii.gz - sub-cal197_ses-M12_T2w.nii.gz - sub-cal197_ses-M12_T2star.nii.gz - sub-van144_ses-M12_acq-T1w_MTS.nii.gz - sub-van144_ses-M12_T2w.nii.gz - sub-van144_ses-M12_acq-MT_MTS.nii.gz - sub-van144_ses-M12_PSIR.nii.gz - sub-van144_ses-M12_T2star.nii.gz List of json files with different data: - sub-mon137_ses-M12_PSIR.json - sub-mon137_ses-M12_T2star.json - sub-van206_ses-M12_PSIR.json - sub-van206_ses-M12_T2star.json - sub-mon096_ses-M12_PSIR.json - sub-mon096_ses-M12_T2star.json - sub-mon111_ses-M12_T2star.json - sub-mon092_ses-M12_T2star.json - sub-van175_ses-M12_T2star.json - sub-van171_ses-M12_T2star.json - sub-van160_ses-M12_T2star.json - sub-mon133_ses-M12_PSIR.json - sub-mon133_ses-M12_T2star.json - sub-mon150_ses-M12_T2star.json - sub-mon150_ses-M12_PSIR.json - sub-van180_ses-M12_T2star.json - sub-mon176_ses-M12_T2star.json - sub-mon176_ses-M12_PSIR.json - sub-van177_ses-M12_T2star.json - sub-van202_ses-M12_T2star.json - sub-van200_ses-M12_T2star.json - sub-mon151_ses-M12_T2star.json - sub-mon151_ses-M12_PSIR.json - sub-van213_ses-M12_PSIR.json - sub-van213_ses-M12_T2star.json - sub-mon010_ses-M12_PSIR.json - sub-mon010_ses-M12_T2star.json - sub-mon119_ses-M12_T2star.json - sub-mon119_ses-M12_PSIR.json - sub-mon052_ses-M12_PSIR.json - sub-mon052_ses-M12_T2star.json - sub-van183_ses-M12_PSIR.json - sub-van165_ses-M12_T2star.json - sub-van137_ses-M12_PSIR.json - sub-van137_ses-M12_T2star.json - sub-van208_ses-M12_T2star.json - sub-mon165_ses-M12_PSIR.json - sub-mon165_ses-M12_T2star.json - sub-mon002_ses-M12_T2star.json - sub-van111_ses-M12_T2star.json - sub-mon164_ses-M12_T2star.json - sub-mon164_ses-M12_PSIR.json - sub-van192_ses-M12_PSIR.json - sub-van192_ses-M12_T2star.json - sub-mon153_ses-M12_PSIR.json - sub-mon168_ses-M12_T2star.json - sub-mon168_ses-M12_PSIR.json - sub-van194_ses-M12_T2star.json - sub-mon004_ses-M12_PSIR.json - sub-van146_ses-M12_T2star.json - sub-van054_ses-M12_PSIR.json - sub-van054_ses-M12_T2star.json - sub-mon031_ses-M12_T2star.json - sub-mon031_ses-M12_PSIR.json - sub-mon154_ses-M12_PSIR.json - sub-mon154_ses-M12_T2star.json - sub-van176_ses-M12_PSIR.json - sub-mon197_ses-M12_PSIR.json - sub-van170_ses-M12_T2star.json - sub-mon157_ses-M12_T2star.json - sub-mon157_ses-M12_PSIR.json - sub-van005_ses-M12_T2star.json - sub-van181_ses-M12_PSIR.json - sub-van148_ses-M12_T2star.json - sub-van185_ses-M12_T2star.json - sub-van212_ses-M12_PSIR.json - sub-van212_ses-M12_T2star.json - sub-mon080_ses-M12_T2star.json - sub-van124_ses-M12_T2star.json - sub-mon187_ses-M12_PSIR.json - sub-van136_ses-M12_T2star.json - sub-mon141_ses-M12_PSIR.json - sub-mon141_ses-M12_T2star.json - sub-mon192_ses-M12_PSIR.json - sub-van022_ses-M12_T2star.json - sub-van022_ses-M12_PSIR.json - sub-mon173_ses-M12_T2star.json - sub-mon173_ses-M12_PSIR.json - sub-mon072_ses-M12_PSIR.json - sub-mon072_ses-M12_T2star.json - sub-mon097_ses-M12_PSIR.json - sub-mon097_ses-M12_T2star.json - sub-mon202_ses-M12_PSIR.json - sub-van139_ses-M12_T2star.json - sub-van162_ses-M12_T2star.json - sub-mon210_ses-M12_PSIR.json - sub-mon210_ses-M12_T2star.json - sub-mon007_ses-M12_T2star.json - sub-mon007_ses-M12_PSIR.json - sub-van141_ses-M12_T2star.json - sub-van155_ses-M12_T2star.json - sub-mon190_ses-M12_T2star.json - sub-mon190_ses-M12_PSIR.json - sub-mon124_ses-M12_T2star.json - sub-mon124_ses-M12_PSIR.json - sub-van182_ses-M12_T2star.json - sub-mon129_ses-M12_PSIR.json - sub-mon129_ses-M12_T2star.json - sub-mon194_ses-M12_PSIR.json - sub-mon194_ses-M12_T2star.json - sub-van163_ses-M12_T2star.json - sub-van163_ses-M12_PSIR.json - sub-van189_ses-M12_T2star.json - sub-van052_ses-M12_T2star.json - sub-van174_ses-M12_T2star.json - sub-mon105_ses-M12_T2star.json - sub-mon014_ses-M12_acq-MT_MTS.json - sub-mon014_ses-M12_T2star.json - sub-mon014_ses-M12_PSIR.json - sub-mon014_ses-M12_acq-T1w_MTS.json - sub-mon014_ses-M12_T2w.json - sub-mon155_ses-M12_PSIR.json - sub-mon155_ses-M12_T2star.json - sub-van065_ses-M12_T2star.json - sub-van207_ses-M12_T2star.json - sub-mon041_ses-M12_PSIR.json - sub-mon041_ses-M12_T2star.json - sub-mon065_ses-M12_PSIR.json - sub-mon065_ses-M12_T2star.json - sub-mon138_ses-M12_PSIR.json - sub-van201_ses-M12_T2star.json - sub-van201_ses-M12_PSIR.json - sub-mon198_ses-M12_PSIR.json - sub-mon198_ses-M12_T2star.json - sub-van135_ses-M12_T2star.json - sub-mon084_ses-M12_PSIR.json - sub-mon084_ses-M12_T2star.json - sub-van034_ses-M12_T2star.json - sub-mon152_ses-M12_T2star.json - sub-mon152_ses-M12_PSIR.json - sub-mon142_ses-M12_PSIR.json - sub-mon142_ses-M12_T2star.json - sub-van164_ses-M12_T2star.json - sub-van191_ses-M12_PSIR.json - sub-van191_ses-M12_T2star.json - sub-van198_ses-M12_T2star.json - sub-van055_ses-M12_PSIR.json - sub-van152_ses-M12_T2star.json - sub-cal143_ses-M12_T2star.json - sub-cal143_ses-M12_acq-MT_MTS.json - sub-cal143_ses-M12_STIR.json - sub-cal143_ses-M12_T2w.json - sub-van133_ses-M12_PSIR.json - sub-mon003_ses-M12_T2star.json - sub-mon003_ses-M12_PSIR.json - sub-van209_ses-M12_T2star.json - sub-mon132_ses-M12_PSIR.json - sub-mon132_ses-M12_T2star.json - sub-van158_ses-M12_T2star.json - sub-mon143_ses-M12_PSIR.json - sub-mon199_ses-M12_T2star.json - sub-van010_ses-M12_PSIR.json - sub-van196_ses-M12_T2star.json - sub-van159_ses-M12_T2star.json - sub-mon006_ses-M12_T2star.json - sub-mon006_ses-M12_PSIR.json - sub-mon050_ses-M12_T2star.json - sub-mon050_ses-M12_PSIR.json - sub-van216_ses-M12_T2star.json - sub-van216_ses-M12_PSIR.json - sub-mon079_ses-M12_PSIR.json List of problematic files: - sub-cal119_ses-M12_T2star.nii.gz List of files with more than 3 dimensions for MTS: - sub-cal121_ses-M12_acq-MT_MTS.nii.gz - sub-cal116_ses-M12_acq-MT_MTS.nii.gz - sub-van150_ses-M12_acq-MT_MTS.nii.gz - sub-mon163_ses-M12_acq-MT_MTS.nii.gz - sub-mon137_ses-M12_acq-MT_MTS.nii.gz - sub-mon125_ses-M12_acq-MT_MTS.nii.gz - sub-mon121_ses-M12_acq-MT_MTS.nii.gz - sub-mon196_ses-M12_acq-MT_MTS.nii.gz - sub-mon186_ses-M12_acq-MT_MTS.nii.gz - sub-cal142_ses-M12_acq-MT_MTS.nii.gz - sub-van206_ses-M12_acq-MT_MTS.nii.gz - sub-cal140_ses-M12_acq-MT_MTS.nii.gz - sub-mon096_ses-M12_acq-MT_MTS.nii.gz - sub-mon111_ses-M12_acq-MT_MTS.nii.gz - sub-mon092_ses-M12_acq-MT_MTS.nii.gz - sub-cal123_ses-M12_acq-MT_MTS.nii.gz - sub-van171_ses-M12_acq-MT_MTS.nii.gz - sub-van160_ses-M12_acq-MT_MTS.nii.gz - sub-mon133_ses-M12_acq-MT_MTS.nii.gz - sub-mon150_ses-M12_acq-MT_MTS.nii.gz - sub-cal170_ses-M12_acq-MT_MTS.nii.gz - sub-cal158_ses-M12_acq-MT_MTS.nii.gz - sub-van180_ses-M12_acq-MT_MTS.nii.gz - sub-mon176_ses-M12_acq-MT_MTS.nii.gz - sub-van177_ses-M12_acq-MT_MTS.nii.gz - sub-mon009_ses-M12_acq-MT_MTS.nii.gz - sub-van202_ses-M12_acq-MT_MTS.nii.gz - sub-van200_ses-M12_acq-MT_MTS.nii.gz - sub-mon151_ses-M12_acq-MT_MTS.nii.gz - sub-van222_ses-M12_acq-MT_MTS.nii.gz - sub-van213_ses-M12_acq-MT_MTS.nii.gz - sub-mon140_ses-M12_acq-MT_MTS.nii.gz - sub-mon209_ses-M12_acq-MT_MTS.nii.gz - sub-cal200_ses-M12_acq-MT_MTS.nii.gz - sub-cal127_ses-M12_acq-MT_MTS.nii.gz - sub-mon036_ses-M12_acq-MT_MTS.nii.gz - sub-van147_ses-M12_acq-MT_MTS.nii.gz - sub-mon162_ses-M12_acq-MT_MTS.nii.gz - sub-mon148_ses-M12_acq-MT_MTS.nii.gz - sub-mon010_ses-M12_acq-MT_MTS.nii.gz - sub-mon119_ses-M12_acq-MT_MTS.nii.gz - sub-cal201_ses-M12_acq-MT_MTS.nii.gz - sub-mon052_ses-M12_acq-MT_MTS.nii.gz - sub-cal198_ses-M12_acq-MT_MTS.nii.gz - sub-van183_ses-M12_acq-MT_MTS.nii.gz - sub-van165_ses-M12_acq-MT_MTS.nii.gz - sub-van137_ses-M12_acq-MT_MTS.nii.gz - sub-van208_ses-M12_acq-MT_MTS.nii.gz - sub-mon165_ses-M12_acq-MT_MTS.nii.gz - sub-mon002_ses-M12_acq-MT_MTS.nii.gz - sub-cal191_ses-M12_acq-MT_MTS.nii.gz - sub-van111_ses-M12_acq-MT_MTS.nii.gz - sub-mon164_ses-M12_acq-MT_MTS.nii.gz - sub-cal083_ses-M12_acq-MT_MTS.nii.gz - sub-cal151_ses-M12_acq-MT_MTS.nii.gz - sub-cal135_ses-M12_acq-MT_MTS.nii.gz - sub-van192_ses-M12_acq-MT_MTS.nii.gz - sub-mon153_ses-M12_acq-MT_MTS.nii.gz - sub-cal104_ses-M12_acq-MT_MTS.nii.gz - sub-cal184_ses-M12_acq-MT_MTS.nii.gz - sub-cal161_ses-M12_acq-MT_MTS.nii.gz - sub-cal168_ses-M12_acq-MT_MTS.nii.gz - sub-mon168_ses-M12_acq-MT_MTS.nii.gz - sub-van194_ses-M12_acq-MT_MTS.nii.gz - sub-mon004_ses-M12_acq-MT_MTS.nii.gz - sub-van146_ses-M12_acq-MT_MTS.nii.gz - sub-van054_ses-M12_acq-MT_MTS.nii.gz - sub-mon031_ses-M12_acq-MT_MTS.nii.gz - sub-mon134_ses-M12_acq-MT_MTS.nii.gz - sub-cal085_ses-M12_acq-MT_MTS.nii.gz - sub-mon154_ses-M12_acq-MT_MTS.nii.gz - sub-mon197_ses-M12_acq-MT_MTS.nii.gz - sub-cal164_ses-M12_acq-MT_MTS.nii.gz - sub-van170_ses-M12_acq-MT_MTS.nii.gz - sub-cal177_ses-M12_acq-MT_MTS.nii.gz - sub-mon157_ses-M12_acq-MT_MTS.nii.gz - sub-mon029_ses-M12_acq-MT_MTS.nii.gz - sub-van005_ses-M12_acq-MT_MTS.nii.gz - sub-cal094_ses-M12_acq-MT_MTS.nii.gz - sub-cal187_ses-M12_acq-MT_MTS.nii.gz - sub-cal188_ses-M12_acq-MT_MTS.nii.gz - sub-cal182_ses-M12_acq-MT_MTS.nii.gz - sub-van181_ses-M12_acq-MT_MTS.nii.gz - sub-van148_ses-M12_acq-MT_MTS.nii.gz - sub-cal109_ses-M12_acq-MT_MTS.nii.gz - sub-cal126_ses-M12_acq-MT_MTS.nii.gz - sub-van185_ses-M12_acq-MT_MTS.nii.gz - sub-cal167_ses-M12_acq-MT_MTS.nii.gz - sub-van212_ses-M12_acq-MT_MTS.nii.gz - sub-mon080_ses-M12_acq-MT_MTS.nii.gz - sub-van124_ses-M12_acq-MT_MTS.nii.gz - sub-cal129_ses-M12_acq-MT_MTS.nii.gz - sub-mon011_ses-M12_acq-MT_MTS.nii.gz - sub-mon108_ses-M12_acq-MT_MTS.nii.gz - sub-mon187_ses-M12_acq-MT_MTS.nii.gz - sub-cal064_ses-M12_acq-MT_MTS.nii.gz - sub-cal152_ses-M12_acq-MT_MTS.nii.gz - sub-cal092_ses-M12_acq-MT_MTS.nii.gz - sub-van136_ses-M12_acq-MT_MTS.nii.gz - sub-cal213_ses-M12_acq-MT_MTS.nii.gz - sub-mon174_ses-M12_acq-MT_MTS.nii.gz - sub-mon141_ses-M12_acq-MT_MTS.nii.gz - sub-mon166_ses-M12_acq-MT_MTS.nii.gz - sub-cal163_ses-M12_acq-MT_MTS.nii.gz - sub-cal110_ses-M12_acq-MT_MTS.nii.gz - sub-mon192_ses-M12_acq-MT_MTS.nii.gz - sub-van161_ses-M12_acq-MT_MTS.nii.gz - sub-van022_ses-M12_acq-MT_MTS.nii.gz - sub-mon173_ses-M12_acq-MT_MTS.nii.gz - sub-cal202_ses-M12_acq-MT_MTS.nii.gz - sub-cal137_ses-M12_acq-MT_MTS.nii.gz - sub-mon118_ses-M12_acq-MT_MTS.nii.gz - sub-mon131_ses-M12_acq-MT_MTS.nii.gz - sub-cal190_ses-M12_acq-MT_MTS.nii.gz - sub-mon167_ses-M12_acq-MT_MTS.nii.gz - sub-mon072_ses-M12_acq-MT_MTS.nii.gz - sub-cal105_ses-M12_acq-MT_MTS.nii.gz - sub-cal176_ses-M12_acq-MT_MTS.nii.gz - sub-cal165_ses-M12_acq-MT_MTS.nii.gz - sub-mon202_ses-M12_acq-MT_MTS.nii.gz - sub-cal160_ses-M12_acq-MT_MTS.nii.gz - sub-van139_ses-M12_acq-MT_MTS.nii.gz - sub-mon171_ses-M12_acq-MT_MTS.nii.gz - sub-cal095_ses-M12_acq-MT_MTS.nii.gz - sub-van162_ses-M12_acq-MT_MTS.nii.gz - sub-mon210_ses-M12_acq-MT_MTS.nii.gz - sub-mon007_ses-M12_acq-MT_MTS.nii.gz - sub-mon001_ses-M12_acq-MT_MTS.nii.gz - sub-cal131_ses-M12_acq-MT_MTS.nii.gz - sub-mon034_ses-M12_acq-MT_MTS.nii.gz - sub-van141_ses-M12_acq-MT_MTS.nii.gz - sub-cal175_ses-M12_acq-MT_MTS.nii.gz - sub-cal145_ses-M12_acq-MT_MTS.nii.gz - sub-cal118_ses-M12_acq-MT_MTS.nii.gz - sub-van211_ses-M12_acq-MT_MTS.nii.gz - sub-cal115_ses-M12_acq-MT_MTS.nii.gz - sub-cal210_ses-M12_acq-MT_MTS.nii.gz - sub-van155_ses-M12_acq-MT_MTS.nii.gz - sub-mon190_ses-M12_acq-MT_MTS.nii.gz - sub-van112_ses-M12_acq-MT_MTS.nii.gz - sub-mon124_ses-M12_acq-MT_MTS.nii.gz - sub-van182_ses-M12_acq-MT_MTS.nii.gz - sub-cal128_ses-M12_acq-MT_MTS.nii.gz - sub-van219_ses-M12_acq-MT_MTS.nii.gz - sub-mon129_ses-M12_acq-MT_MTS.nii.gz - sub-van138_ses-M12_acq-MT_MTS.nii.gz - sub-cal090_ses-M12_acq-MT_MTS.nii.gz - sub-cal107_ses-M12_acq-MT_MTS.nii.gz - sub-mon194_ses-M12_acq-MT_MTS.nii.gz - sub-cal144_ses-M12_acq-MT_MTS.nii.gz - sub-van163_ses-M12_acq-MT_MTS.nii.gz - sub-van189_ses-M12_acq-MT_MTS.nii.gz - sub-van052_ses-M12_acq-MT_MTS.nii.gz - sub-van174_ses-M12_acq-MT_MTS.nii.gz - sub-mon105_ses-M12_acq-MT_MTS.nii.gz - sub-mon060_ses-M12_acq-MT_MTS.nii.gz - sub-mon191_ses-M12_acq-MT_MTS.nii.gz - sub-mon126_ses-M12_acq-MT_MTS.nii.gz - sub-mon005_ses-M12_acq-MT_MTS.nii.gz - sub-mon014_ses-M12_acq-MT_MTS.nii.gz - sub-cal157_ses-M12_acq-MT_MTS.nii.gz - sub-cal149_ses-M12_acq-MT_MTS.nii.gz - sub-mon055_ses-M12_acq-MT_MTS.nii.gz - sub-mon155_ses-M12_acq-MT_MTS.nii.gz - sub-van072_ses-M12_acq-MT_MTS.nii.gz - sub-mon201_ses-M12_acq-MT_MTS.nii.gz - sub-mon207_ses-M12_acq-MT_MTS.nii.gz - sub-van065_ses-M12_acq-MT_MTS.nii.gz - sub-van207_ses-M12_acq-MT_MTS.nii.gz - sub-mon041_ses-M12_acq-MT_MTS.nii.gz - sub-mon065_ses-M12_acq-MT_MTS.nii.gz - sub-cal206_ses-M12_acq-MT_MTS.nii.gz - sub-van201_ses-M12_acq-MT_MTS.nii.gz - sub-cal195_ses-M12_acq-MT_MTS.nii.gz - sub-mon032_ses-M12_acq-MT_MTS.nii.gz - sub-mon198_ses-M12_acq-MT_MTS.nii.gz - sub-cal146_ses-M12_acq-MT_MTS.nii.gz - sub-cal194_ses-M12_acq-MT_MTS.nii.gz - sub-van135_ses-M12_acq-MT_MTS.nii.gz - sub-mon136_ses-M12_acq-MT_MTS.nii.gz - sub-mon084_ses-M12_acq-MT_MTS.nii.gz - sub-cal192_ses-M12_acq-MT_MTS.nii.gz - sub-cal185_ses-M12_acq-MT_MTS.nii.gz - sub-van034_ses-M12_acq-MT_MTS.nii.gz - sub-mon152_ses-M12_acq-MT_MTS.nii.gz - sub-cal214_ses-M12_acq-MT_MTS.nii.gz - sub-van151_ses-M12_acq-MT_MTS.nii.gz - sub-mon142_ses-M12_acq-MT_MTS.nii.gz - sub-van164_ses-M12_acq-MT_MTS.nii.gz - sub-cal169_ses-M12_acq-MT_MTS.nii.gz - sub-mon095_ses-M12_acq-MT_MTS.nii.gz - sub-van191_ses-M12_acq-MT_MTS.nii.gz - sub-mon183_ses-M12_acq-MT_MTS.nii.gz - sub-cal209_ses-M12_acq-MT_MTS.nii.gz - sub-mon104_ses-M12_acq-MT_MTS.nii.gz - sub-mon077_ses-M12_acq-MT_MTS.nii.gz - sub-van198_ses-M12_acq-MT_MTS.nii.gz - sub-van055_ses-M12_acq-MT_MTS.nii.gz - sub-van152_ses-M12_acq-MT_MTS.nii.gz - sub-mon160_ses-M12_acq-MT_MTS.nii.gz - sub-van221_ses-M12_acq-MT_MTS.nii.gz - sub-cal143_ses-M12_acq-MT_MTS.nii.gz - sub-cal186_ses-M12_acq-MT_MTS.nii.gz - sub-mon139_ses-M12_acq-MT_MTS.nii.gz - sub-van133_ses-M12_acq-MT_MTS.nii.gz - sub-cal134_ses-M12_acq-MT_MTS.nii.gz - sub-mon003_ses-M12_acq-MT_MTS.nii.gz - sub-mon064_ses-M12_acq-MT_MTS.nii.gz - sub-mon175_ses-M12_acq-MT_MTS.nii.gz - sub-mon211_ses-M12_acq-MT_MTS.nii.gz - sub-van209_ses-M12_acq-MT_MTS.nii.gz - sub-mon132_ses-M12_acq-MT_MTS.nii.gz - sub-cal114_ses-M12_acq-MT_MTS.nii.gz - sub-van158_ses-M12_acq-MT_MTS.nii.gz - sub-mon143_ses-M12_acq-MT_MTS.nii.gz - sub-mon189_ses-M12_acq-MT_MTS.nii.gz - sub-mon113_ses-M12_acq-MT_MTS.nii.gz - sub-mon199_ses-M12_acq-MT_MTS.nii.gz - sub-mon185_ses-M12_acq-MT_MTS.nii.gz - sub-cal122_ses-M12_acq-MT_MTS.nii.gz - sub-van010_ses-M12_acq-MT_MTS.nii.gz - sub-van196_ses-M12_acq-MT_MTS.nii.gz - sub-van172_ses-M12_acq-MT_MTS.nii.gz - sub-van159_ses-M12_acq-MT_MTS.nii.gz - sub-mon006_ses-M12_acq-MT_MTS.nii.gz - sub-cal088_ses-M12_acq-MT_MTS.nii.gz - sub-mon193_ses-M12_acq-MT_MTS.nii.gz - sub-cal197_ses-M12_acq-MT_MTS.nii.gz - sub-van144_ses-M12_acq-MT_MTS.nii.gz - sub-cal119_ses-M12_acq-MT_MTS.nii.gz - sub-cal138_ses-M12_acq-MT_MTS.nii.gz - sub-mon050_ses-M12_acq-MT_MTS.nii.gz - sub-cal078_ses-M12_acq-MT_MTS.nii.gz - sub-mon172_ses-M12_acq-MT_MTS.nii.gz - sub-cal056_ses-M12_acq-MT_MTS.nii.gz - sub-cal073_ses-M12_acq-MT_MTS.nii.gz - sub-cal106_ses-M12_acq-MT_MTS.nii.gz - sub-van216_ses-M12_acq-MT_MTS.nii.gz - sub-mon079_ses-M12_acq-MT_MTS.nii.gz - sub-mon149_ses-M12_acq-MT_MTS.nii.gz - sub-cal117_ses-M12_acq-MT_MTS.nii.gz - sub-cal072_ses-M12_acq-MT_MTS.nii.gz - sub-mon169_ses-M12_acq-MT_MTS.nii.gz - sub-cal150_ses-M12_acq-MT_MTS.nii.gz List of files with more than 3 dimensions for T2star: - sub-van150_ses-M12_T2star.nii.gz - sub-mon163_ses-M12_T2star.nii.gz - sub-mon137_ses-M12_T2star.nii.gz - sub-mon125_ses-M12_T2star.nii.gz - sub-mon121_ses-M12_T2star.nii.gz - sub-mon196_ses-M12_T2star.nii.gz - sub-mon186_ses-M12_T2star.nii.gz - sub-van206_ses-M12_T2star.nii.gz - sub-mon096_ses-M12_T2star.nii.gz - sub-mon111_ses-M12_T2star.nii.gz - sub-mon092_ses-M12_T2star.nii.gz - sub-van175_ses-M12_T2star.nii.gz - sub-van171_ses-M12_T2star.nii.gz - sub-van160_ses-M12_T2star.nii.gz - sub-mon133_ses-M12_T2star.nii.gz - sub-mon150_ses-M12_T2star.nii.gz - sub-van180_ses-M12_T2star.nii.gz - sub-mon176_ses-M12_T2star.nii.gz - sub-van177_ses-M12_T2star.nii.gz - sub-mon009_ses-M12_T2star.nii.gz - sub-van202_ses-M12_T2star.nii.gz - sub-van200_ses-M12_T2star.nii.gz - sub-mon151_ses-M12_T2star.nii.gz - sub-van222_ses-M12_T2star.nii.gz - sub-van213_ses-M12_T2star.nii.gz - sub-mon140_ses-M12_T2star.nii.gz - sub-mon209_ses-M12_T2star.nii.gz - sub-mon036_ses-M12_T2star.nii.gz - sub-van147_ses-M12_T2star.nii.gz - sub-mon162_ses-M12_T2star.nii.gz - sub-mon148_ses-M12_T2star.nii.gz - sub-mon010_ses-M12_T2star.nii.gz - sub-mon119_ses-M12_T2star.nii.gz - sub-mon052_ses-M12_T2star.nii.gz - sub-van183_ses-M12_T2star.nii.gz - sub-van165_ses-M12_T2star.nii.gz - sub-van137_ses-M12_T2star.nii.gz - sub-van208_ses-M12_T2star.nii.gz - sub-mon165_ses-M12_T2star.nii.gz - sub-mon002_ses-M12_T2star.nii.gz - sub-van111_ses-M12_T2star.nii.gz - sub-mon164_ses-M12_T2star.nii.gz - sub-van192_ses-M12_T2star.nii.gz - sub-mon153_ses-M12_T2star.nii.gz - sub-mon168_ses-M12_T2star.nii.gz - sub-van194_ses-M12_T2star.nii.gz - sub-mon004_ses-M12_T2star.nii.gz - sub-van146_ses-M12_T2star.nii.gz - sub-van054_ses-M12_T2star.nii.gz - sub-mon031_ses-M12_T2star.nii.gz - sub-mon134_ses-M12_T2star.nii.gz - sub-mon154_ses-M12_T2star.nii.gz - sub-van176_ses-M12_T2star.nii.gz - sub-mon197_ses-M12_T2star.nii.gz - sub-van170_ses-M12_T2star.nii.gz - sub-mon157_ses-M12_T2star.nii.gz - sub-mon029_ses-M12_T2star.nii.gz - sub-van005_ses-M12_T2star.nii.gz - sub-van181_ses-M12_T2star.nii.gz - sub-van148_ses-M12_T2star.nii.gz - sub-van185_ses-M12_T2star.nii.gz - sub-van212_ses-M12_T2star.nii.gz - sub-mon080_ses-M12_T2star.nii.gz - sub-van124_ses-M12_T2star.nii.gz - sub-mon011_ses-M12_T2star.nii.gz - sub-mon108_ses-M12_T2star.nii.gz - sub-mon187_ses-M12_T2star.nii.gz - sub-van136_ses-M12_T2star.nii.gz - sub-mon174_ses-M12_T2star.nii.gz - sub-mon141_ses-M12_T2star.nii.gz - sub-mon166_ses-M12_T2star.nii.gz - sub-mon192_ses-M12_T2star.nii.gz - sub-van161_ses-M12_T2star.nii.gz - sub-van022_ses-M12_T2star.nii.gz - sub-mon173_ses-M12_T2star.nii.gz - sub-mon118_ses-M12_T2star.nii.gz - sub-mon131_ses-M12_T2star.nii.gz - sub-mon167_ses-M12_T2star.nii.gz - sub-mon072_ses-M12_T2star.nii.gz - sub-mon097_ses-M12_T2star.nii.gz - sub-mon202_ses-M12_T2star.nii.gz - sub-van139_ses-M12_T2star.nii.gz - sub-mon171_ses-M12_T2star.nii.gz - sub-van162_ses-M12_T2star.nii.gz - sub-mon210_ses-M12_T2star.nii.gz - sub-mon007_ses-M12_T2star.nii.gz - sub-mon001_ses-M12_T2star.nii.gz - sub-mon034_ses-M12_T2star.nii.gz - sub-van141_ses-M12_T2star.nii.gz - sub-van211_ses-M12_T2star.nii.gz - sub-van155_ses-M12_T2star.nii.gz - sub-mon190_ses-M12_T2star.nii.gz - sub-van112_ses-M12_T2star.nii.gz - sub-mon124_ses-M12_T2star.nii.gz - sub-van182_ses-M12_T2star.nii.gz - sub-van219_ses-M12_T2star.nii.gz - sub-mon129_ses-M12_T2star.nii.gz - sub-van138_ses-M12_T2star.nii.gz - sub-mon194_ses-M12_T2star.nii.gz - sub-van163_ses-M12_T2star.nii.gz - sub-van189_ses-M12_T2star.nii.gz - sub-van052_ses-M12_T2star.nii.gz - sub-van174_ses-M12_T2star.nii.gz - sub-mon105_ses-M12_T2star.nii.gz - sub-mon060_ses-M12_T2star.nii.gz - sub-mon191_ses-M12_T2star.nii.gz - sub-mon126_ses-M12_T2star.nii.gz - sub-mon005_ses-M12_T2star.nii.gz - sub-mon014_ses-M12_T2star.nii.gz - sub-mon055_ses-M12_T2star.nii.gz - sub-mon155_ses-M12_T2star.nii.gz - sub-van072_ses-M12_T2star.nii.gz - sub-mon201_ses-M12_T2star.nii.gz - sub-mon207_ses-M12_T2star.nii.gz - sub-van065_ses-M12_T2star.nii.gz - sub-van207_ses-M12_T2star.nii.gz - sub-mon041_ses-M12_T2star.nii.gz - sub-mon065_ses-M12_T2star.nii.gz - sub-mon138_ses-M12_T2star.nii.gz - sub-van201_ses-M12_T2star.nii.gz - sub-mon032_ses-M12_T2star.nii.gz - sub-mon198_ses-M12_T2star.nii.gz - sub-van135_ses-M12_T2star.nii.gz - sub-mon136_ses-M12_T2star.nii.gz - sub-mon084_ses-M12_T2star.nii.gz - sub-van034_ses-M12_T2star.nii.gz - sub-mon152_ses-M12_T2star.nii.gz - sub-van151_ses-M12_T2star.nii.gz - sub-mon142_ses-M12_T2star.nii.gz - sub-van164_ses-M12_T2star.nii.gz - sub-mon095_ses-M12_T2star.nii.gz - sub-van191_ses-M12_T2star.nii.gz - sub-mon183_ses-M12_T2star.nii.gz - sub-mon104_ses-M12_T2star.nii.gz - sub-mon077_ses-M12_T2star.nii.gz - sub-van198_ses-M12_T2star.nii.gz - sub-van055_ses-M12_T2star.nii.gz - sub-van152_ses-M12_T2star.nii.gz - sub-mon160_ses-M12_T2star.nii.gz - sub-van221_ses-M12_T2star.nii.gz - sub-mon139_ses-M12_T2star.nii.gz - sub-van133_ses-M12_T2star.nii.gz - sub-mon003_ses-M12_T2star.nii.gz - sub-mon175_ses-M12_T2star.nii.gz - sub-mon211_ses-M12_T2star.nii.gz - sub-van209_ses-M12_T2star.nii.gz - sub-mon132_ses-M12_T2star.nii.gz - sub-van158_ses-M12_T2star.nii.gz - sub-mon143_ses-M12_T2star.nii.gz - sub-mon189_ses-M12_T2star.nii.gz - sub-mon113_ses-M12_T2star.nii.gz - sub-mon199_ses-M12_T2star.nii.gz - sub-mon185_ses-M12_T2star.nii.gz - sub-van010_ses-M12_T2star.nii.gz - sub-van196_ses-M12_T2star.nii.gz - sub-van172_ses-M12_T2star.nii.gz - sub-van159_ses-M12_T2star.nii.gz - sub-mon006_ses-M12_T2star.nii.gz - sub-mon193_ses-M12_T2star.nii.gz - sub-van144_ses-M12_T2star.nii.gz - sub-mon050_ses-M12_T2star.nii.gz - sub-mon172_ses-M12_T2star.nii.gz - sub-van216_ses-M12_T2star.nii.gz - sub-mon079_ses-M12_T2star.nii.gz - sub-mon149_ses-M12_T2star.nii.gz - sub-mon169_ses-M12_T2star.nii.gz List of new files with more than 3 dimensions for MTS: - sub-van150_ses-M12_acq-MT_MTS.nii.gz - sub-cal140_ses-M12_acq-MT_MTS.nii.gz - sub-van222_ses-M12_acq-MT_MTS.nii.gz - sub-cal200_ses-M12_acq-MT_MTS.nii.gz - sub-van147_ses-M12_acq-MT_MTS.nii.gz - sub-cal198_ses-M12_acq-MT_MTS.nii.gz - sub-cal191_ses-M12_acq-MT_MTS.nii.gz - sub-cal151_ses-M12_acq-MT_MTS.nii.gz - sub-mon108_ses-M12_acq-MT_MTS.nii.gz - sub-cal213_ses-M12_acq-MT_MTS.nii.gz - sub-cal131_ses-M12_acq-MT_MTS.nii.gz - sub-van211_ses-M12_acq-MT_MTS.nii.gz - sub-cal210_ses-M12_acq-MT_MTS.nii.gz - sub-van112_ses-M12_acq-MT_MTS.nii.gz - sub-van219_ses-M12_acq-MT_MTS.nii.gz - sub-cal206_ses-M12_acq-MT_MTS.nii.gz - sub-cal185_ses-M12_acq-MT_MTS.nii.gz - sub-cal214_ses-M12_acq-MT_MTS.nii.gz - sub-van151_ses-M12_acq-MT_MTS.nii.gz - sub-cal209_ses-M12_acq-MT_MTS.nii.gz - sub-van221_ses-M12_acq-MT_MTS.nii.gz - sub-mon139_ses-M12_acq-MT_MTS.nii.gz - sub-mon064_ses-M12_acq-MT_MTS.nii.gz - sub-van172_ses-M12_acq-MT_MTS.nii.gz - sub-cal197_ses-M12_acq-MT_MTS.nii.gz - sub-van144_ses-M12_acq-MT_MTS.nii.gz List of new files with more than 3 dimensions for T2star: - sub-van150_ses-M12_T2star.nii.gz - sub-van222_ses-M12_T2star.nii.gz - sub-van147_ses-M12_T2star.nii.gz - sub-mon108_ses-M12_T2star.nii.gz - sub-van211_ses-M12_T2star.nii.gz - sub-van112_ses-M12_T2star.nii.gz - sub-van219_ses-M12_T2star.nii.gz - sub-van151_ses-M12_T2star.nii.gz - sub-van221_ses-M12_T2star.nii.gz - sub-mon139_ses-M12_T2star.nii.gz - sub-van172_ses-M12_T2star.nii.gz - sub-van144_ses-M12_T2star.nii.gz

TODO:

[x] For the files where either the data or the header was changed, the segmentations need to be checked to ensure that they still match the image.

plbenveniste commented 6 months ago

The segmentations were checked for the modified files (i.e. only subject sub-mon014_ses-M12).

Changes were pushed to branch plb/update_m12_with_2024_02_26_data and PR was opened. Ready for merge now.

ivadomed / canproco

Curate M12 data #84