issues
search
jackh726
/
bigtools
A high-performance BigWig and BigBed library in Rust
MIT License
70
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
pybigwig's values() not reading outside chromosome
#62
casblaauw
opened
1 day ago
1
Select position range in BigWig
#61
multimeric
opened
1 day ago
2
Make certain fields public within BigWigMerge structs
#60
donaldcampbelljr
closed
2 days ago
1
Access bigwigmerge from other crates
#59
donaldcampbelljr
opened
2 days ago
4
Add `--clip` argument to `bedgraphtobigwig`
#58
nleroy917
opened
3 days ago
1
pybigtools should allow setting autosql
#57
jackh726
opened
1 week ago
0
`bigtools bedgraphtobigwig` -- add option to skip invalid chromosomes
#56
nleroy917
opened
2 weeks ago
6
Issue with resulting .bigwig file and IGV
#55
maxgmarin
closed
2 weeks ago
4
pybigtools bigbed write appears to store chrom as "rest"
#54
nvictus
closed
1 week ago
3
bigwigaverageoverbed: optionally allow execution to continue after: `The passed chromosome (X) was incorrect`
#53
ghuls
opened
1 month ago
1
Allow renaming chromosome names in bigWig/bigBed files.
#52
ghuls
opened
1 month ago
0
installing pybigtools fails due to inability to compile ring v0.17.8
#51
dmalzl
opened
1 month ago
2
Support for bigbed
#50
pkerpedjiev
closed
3 months ago
2
bedToBigBed allow1bpOverlap
#49
mrvollger
closed
1 week ago
1
Missing fields when using `-a` with bedtobigbed
#48
mrvollger
opened
3 months ago
35
Granularize api tests
#47
nvictus
closed
4 months ago
0
Add bb test files
#46
nvictus
closed
4 months ago
3
Refactor bigtools internals and API for writing
#45
jackh726
closed
4 months ago
1
Refactor pybigtools API
#44
jackh726
closed
4 months ago
0
pybigtools: NumPy 2.0
#43
nvictus
opened
5 months ago
3
Add more bigwigaverageoverbed stats
#42
ghuls
closed
4 months ago
19
Fix behaviour of names argument in bigWigAverageOverBed of pybigtools.
#41
ghuls
closed
5 months ago
1
Update citation
#40
nvictus
closed
5 months ago
0
Support specifying bed(Graph) input files as .gz
#39
jackh726
opened
5 months ago
4
Implement `-minMax` option of bigWigAverageOverBed.
#38
ghuls
closed
4 months ago
3
build: Add .cargo/config for project root `cargo build` on macos
#37
nvictus
closed
6 months ago
0
Specialized Python exceptions
#36
nvictus
closed
7 months ago
0
Make `is_bigwig`, `is_bigbed` properties
#35
nvictus
closed
7 months ago
0
Enhancements to Python writer API
#34
nvictus
opened
8 months ago
0
Enhancements to Python reader API
#33
nvictus
closed
4 months ago
0
Add "__version__" package attribute
#32
ghuls
closed
8 months ago
1
Update README.md
#31
nvictus
closed
8 months ago
0
Patch bump
#30
nvictus
closed
8 months ago
0
Change build steps
#29
nvictus
closed
8 months ago
0
minor pybigtools complaints
#28
sergpolly
closed
8 months ago
2
pybigwig regression writing bigwigs in >=0.1.1
#27
sergpolly
closed
8 months ago
3
Bump pybigtools for packaging fix
#26
nvictus
closed
8 months ago
0
Make sure license file is bundled with sdist
#25
nvictus
closed
8 months ago
0
Add CITATION.cff
#24
nvictus
closed
9 months ago
0
Update README.md
#23
nvictus
closed
9 months ago
0
Fix "read" feature.
#22
ghuls
closed
9 months ago
1
Add Zenodo badge
#21
nvictus
closed
9 months ago
0
Switch to rustls for attohttpc
#20
anderspitman
closed
9 months ago
2
Avoiding OpenSSL
#19
anderspitman
closed
9 months ago
2
bigtools bigwigtobedgraph hangs for certain bigwig file created with pyBigWig
#18
ghuls
closed
9 months ago
3
Move cancellation check to `build.commands`
#17
nvictus
closed
9 months ago
1
Fix typo
#16
nvictus
closed
9 months ago
0
Add logo
#15
nvictus
closed
9 months ago
0
Readthedocs configuration
#14
nvictus
closed
9 months ago
4
Conditional python release workflow
#13
nvictus
closed
9 months ago
0
Next