Uncovering key regulatory mechanisms in the molecular response of mesenchymal stem cells to Mg2+ ions through protein network analysis

Content

• notebooks: jupyter notebooks to run the scripts
• data: the folder that contains original proteomics data
• statistical_analysis: the R script and the results of the time-series statitical analysis
• Proteomics_MSC: Python scripts that process the whole analysis except the statistical analysis
• results: the results exluding the statistical analysis

How to run

First, install the package to avoid relative importing. In the main directory:

python setup.py install --user

Then, navigate to the notebooks folder and run the relevant section. For DE analysis, we used R script. The code and the results are located in the 'statitical_analysis' forlder.

Authors

• Jalil Nourisa
• Farhad Shakeri
• Antoine Passemiers

  Contribution

  For enquiries, pls contact Jalil Nourisa (jalil.nourisa@gmail.com)