deleted CDS - Githubissues

japonicusdb / japonicus-curation

Data files for JaponicusDB

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Open ValWood opened 3 years ago

ValWood commented 3 years ago

[x] "SJAG_06604" degraded transposon coding region is on opposite strand
[x] "SJAG_06604" degraded transposon coding region is on opposite strand COMMITTED [main 9a2d9e1]

ValWood commented 3 years ago

[x] SJAG_05637 mis-prediction. There was no similarity and CDS looked too close to syntenic gene nrf1 in pombe

pombe

japonicus (SJAG_01319 is nrf1) New gene:

Is conserved

Interesting little thing.....

[main 071a1eb]

ValWood commented 3 years ago

ValWood commented 3 years ago

deleted

[x] SJAG_06618 jackhmmr/PSI/FASTA none, synteny break point, no methionine, now way to trim or splice [main 2b8216e] removed SJAG_06618 no met

[x] SJAG_06585 no methionine, no syntenic orf, no similarity
[x] SJAG_06617 replaced by SJAG_07005
[x] SJAG_03830 removed. Replaced by SJAG_07006 orthologous to SPBP4H10.08 [main 9142c84] gene stucture updates and removals

ValWood commented 3 years ago

ValWood commented 3 years ago

[main 1f94d6f] gene structure updates committed