Raw data files for building JaponicusDB:
supporting_files/uniprot_ids_names_products.tsv
: japonicus gene
names, product and UniProtKB accession, downloaded from UniProtsystematic_id_uniprot_mapping.tsv
: japonicus ID to UniProt
mapping created from uniprot_ids_names_products.tsv
contig/*
: EMBL files from ENA with:
/locus_tag
changed to /systematic_id
/primary_name=...
manual_orthologs.tsv
: manually curated japonicus<->pombe orthologspfam_japonicus_protein_data.json
: raw data from Pfam with
coiled-coil, low complexity and disordered regions