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jaredgk
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PPP
Repository for pipeline code
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invalid specifier '>=3.6.*'
#50
A-Hooft
opened
4 months ago
0
Raya/add cv to admixture
#49
raywray
closed
8 months ago
0
Merged vcf for vcf_four_gamete.py ?
#48
GuitCos
opened
9 months ago
0
VCF to SFS
#47
ValentinaBoP
opened
1 year ago
0
Cannot update model file
#46
Neato-Nick
opened
2 years ago
2
eigenstrat not allowed, but described in docs
#45
troycomi
opened
2 years ago
0
rpy2 not in requirements
#44
troycomi
opened
2 years ago
1
Strange Fis estimates
#43
siribi
opened
2 years ago
1
High Tajima's D value
#42
atoselan
closed
2 years ago
5
Combining files for many populations
#41
allisoncoomber
closed
2 years ago
1
vcf_to_ima.py error
#40
xwang111
opened
2 years ago
3
Support request : vcf_phase.py gives empty output
#39
Chaima-Bouchenak
opened
2 years ago
1
vcf_to_treemix.py Error
#38
Safae1501
opened
2 years ago
1
vcf_to_gphocs failed
#37
willright28
opened
2 years ago
1
vcf_bed_to_seq doesn't take BED file as input
#36
Neato-Nick
closed
2 years ago
2
Undefined picard_path when phasing
#35
Neato-Nick
opened
3 years ago
5
Got error in the 1st step vcf_filter.py
#34
siyeongjun
closed
3 years ago
7
vcf to gphocs
#33
glaudelrio
opened
3 years ago
1
logging PPP version
#32
jodyhey
closed
3 years ago
1
informative_loci_filter not running on .vcf.gz
#31
jodyhey
closed
3 years ago
1
informative_loci_filter is skipping all chromosomes but the first
#30
jodyhey
closed
3 years ago
3
vcf_split dir error
#29
jodyhey
closed
3 years ago
1
vcf_split directory creation error
#28
jodyhey
closed
3 years ago
1
four_gamete error
#27
jodyhey
closed
3 years ago
4
can't run bed_utilities.py --utility merge
#26
jodyhey
closed
3 years ago
1
vcf_to_ima.py should have an option for the maximum number of loci to include
#25
jodyhey
opened
3 years ago
1
informative_loci_filter errors
#24
jodyhey
closed
3 years ago
13
reposting genome size file issue
#23
jodyhey
closed
3 years ago
3
not clear how to make the chromosome size file
#22
jodyhey
closed
3 years ago
1
model file error, example in documentation includes "tree", but this triggers error
#21
jodyhey
closed
3 years ago
1
vcf_filter sample error
#20
jodyhey
closed
3 years ago
1
Missingness
#19
vappiah
closed
3 years ago
3
Jody
#18
aewebb80
closed
4 years ago
0
Jody
#17
aewebb80
closed
4 years ago
0
VCF Phase XML addition
#16
jtedjo
closed
6 years ago
0
plink2 major issue
#15
jaredgk
closed
6 years ago
1
Phaser XML issue
#14
jaredgk
closed
6 years ago
1
Documentation Update
#13
aewebb80
closed
5 years ago
0
Misc project management
#12
jaredgk
closed
3 years ago
0
VCF Filter
#11
aewebb80
closed
5 years ago
0
UML diagrams
#10
jaredgk
closed
5 years ago
0
Update vcf_sampler output system
#9
aewebb80
closed
5 years ago
0
liftOver
#8
jaredgk
closed
3 years ago
0
Phasing
#7
aewebb80
closed
5 years ago
0
Extend vcftools wrapper
#6
aewebb80
closed
7 years ago
0
Logging
#5
jaredgk
closed
7 years ago
0
Best practices
#4
jaredgk
closed
3 years ago
0
Features for vcf_ref_to_seq
#3
jaredgk
closed
7 years ago
0
Repo for papers
#2
jaredgk
closed
3 years ago
1
Test thing
#1
jaredgk
closed
7 years ago
0
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