jasonsahl LS-BSR issues

jasonsahl / LS-BSR

Large scale Blast Score Ratio (BSR) analysis

GNU General Public License v3.0

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issues

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Above species level?

#32 stianale closed 4 months ago
1
Fix the reference genome to compare

#31 shashibisht9 closed 11 months ago
2
FileNotFoundError: Errno 2 No such file or directory: 'duplicate_ids.txt'

#30 yzhzu closed 3 years ago
3
Transpose a BSR matrix

#29 haruosuz closed 3 years ago
2
AssertionError: Tuples differ

#28 haruosuz closed 3 years ago
1
can i retrieve homologues from LS-BSR results or temp files?

#27 EmilianoMaresi closed 1 year ago
1
Error Installing LS_BSR

#26 Devyani06 closed 5 years ago
1
add conda recipe

#25 corburn closed 5 years ago
0
Manual in Markdown format?

#24 tseemann closed 6 years ago
2
Is LS_BSR in conda or brew?

#23 tseemann closed 3 years ago
2
Fix all the markdown headings

#22 tseemann closed 6 years ago
0
Error with test 3

#21 nana-marinbio closed 7 years ago
9
LS-BSR pipeline query

#20 ReemaSingh closed 7 years ago
4
igs problem

#19 EricDeveaud closed 7 years ago
1
Bug: softlinks as input to -d can lead to problems

#18 bachev closed 7 years ago
4
Error: NameError: global name 'logging' is not defined

#17 bachev closed 7 years ago
2
igs missing? (Your environment is not set correctly. Please add LS-BSR to your PYTHONPATH and try again)

#16 bachev closed 7 years ago
2
Visualization of output

#15 bluefish171 closed 7 years ago
1
Fix problem with computing clusters that use separate file systems

#14 davised closed 7 years ago
1
ls-bsr > 1

#13 maesaar closed 8 years ago
3
error message "Clustering chosen, but no method selected...exiting"

#12 dutchscientist closed 8 years ago
2
BSR values >1

#11 ar0ch closed 8 years ago
9
Inconsistent interpretation of "processors" argument

#10 ar0ch closed 8 years ago
1
shutil.copy may be better than os.link in line 111 in ls_bsr.py

#9 cvn001 closed 8 years ago
4
vsearch vs usearch

#8 brigidar closed 8 years ago
12
Consider free VSEARCH instead of USEARCH

#7 tseemann closed 9 years ago
1
Use BLAST+ instead of BLAST ?

#6 tseemann closed 9 years ago
6
Errors with select_seqs_by_IDs.py and filter_BSR_variome.py

#5 OJO2014 closed 10 years ago
9
Problem with test_all_functions.py

#4 sinnamone closed 10 years ago
7
BSR matrix not as expected

#3 mgalardini closed 10 years ago
6
Your environment is not set correctly. Please add LS-BSR to your PYTHONPATH and try again

#2 sadieleob-zz closed 10 years ago
7
Removed pyc files

#1 mgalardini closed 7 years ago
0