jbloomlab / phydms

phylogenetic analyses informed by deep mutational scanning data
GNU General Public License v3.0
14 stars 4 forks source link

Rel names #32

Closed skhilton closed 4 years ago

skhilton commented 4 years ago

This PR changes some of the command line interface names and slightly changes the output files.

@jon-mah: The purpose of this was to clean-up the code and make sure the naming was consistent. Can you look over the code and point out to me places I might have missed?