phydms
.. image:: https://travis-ci.org/jbloomlab/phydms.svg?branch=master :target: https://travis-ci.org/jbloomlab/phydms
phydms
enables phy\logenetic analyses using d\eep m\utational s\canning data to inform the substitution models. It implements Exp\erimentally informed c\odon m\odels (ExpCM) for phylogenetic inference and the detection of biologically interesting selection.
phydms
is written by the Bloom lab
_ (see https://github.com/jbloomlab/phydms/contributors for a full list of contributors).
See the phydms documentation
_ for information about using phydms
and details about the recommended installation process.
The phydms source code
is freely available under a GPLv3
license.
If you use phydms
, please cite it appropriately
_.
.. Jesse Bloom
: http://research.fhcrc.org/bloom/en.html
.. phydms documentation
: http://jbloomlab.github.io/phydms/
.. phydms source code
: https://github.com/jbloomlab/phydms
.. GPLv3
: http://www.gnu.org/copyleft/gpl.html
.. Bloom lab
: http://labs.fhcrc.org/bloom
.. cite it appropriately
: http://jbloomlab.github.io/phydms/acknowledgments.html