======================== phydms

.. image:: https://travis-ci.org/jbloomlab/phydms.svg?branch=master :target: https://travis-ci.org/jbloomlab/phydms

phydms enables phy\logenetic analyses using d\eep m\utational s\canning data to inform the substitution models. It implements Exp\erimentally informed c\odon m\odels (ExpCM) for phylogenetic inference and the detection of biologically interesting selection.

phydms is written by the Bloom lab_ (see https://github.com/jbloomlab/phydms/contributors for a full list of contributors).

See the phydms documentation_ for information about using phydms and details about the recommended installation process.

The phydms source code is freely available under a GPLv3 license.

If you use phydms, please cite it appropriately_.

.. Jesse Bloom: http://research.fhcrc.org/bloom/en.html .. phydms documentation: http://jbloomlab.github.io/phydms/ .. phydms source code: https://github.com/jbloomlab/phydms .. GPLv3: http://www.gnu.org/copyleft/gpl.html .. Bloom lab: http://labs.fhcrc.org/bloom .. cite it appropriately: http://jbloomlab.github.io/phydms/acknowledgments.html