jdayton3 Confounded issues

jdayton3 / Confounded

Removing batch effects & confounding effects from data using deep learning

MIT License

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issues

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Added logic to save columns in their original order.

#72 srp33 closed 5 years ago
1
Maintaining original column order after adjustment

#71 jdayton3 closed 5 years ago
0
Remove junk code

#70 jdayton3 closed 5 years ago
0
Don't reload the last discriminator layer

#69 jdayton3 closed 5 years ago
1
Save and load weights

#68 jdayton3 closed 5 years ago
0
Optionally save and restore the model

#67 jdayton3 closed 5 years ago
1
Fix argparse code

#66 jdayton3 closed 5 years ago
0
Try different data and network configurations

#65 jdayton3 closed 5 years ago
0
Freeze discriminator layers when training autoencoder

#64 jdayton3 closed 5 years ago
0
Are the discriminator layers frozen when training the autoencoder?

#63 jdayton3 closed 5 years ago
1
Update ComBat to work with Anaconda and update documentation

#62 jdayton3 closed 5 years ago
0
Fix bug with ComBat script

#61 jdayton3 closed 6 years ago
0
Use GSE39582 RNA-Seq data

#60 jdayton3 closed 5 years ago
0
Script to run Distribution Matching Resnet & get output

#59 jdayton3 closed 5 years ago
1
Make ComBat accept data in the same format as Confounded

#58 jdayton3 closed 6 years ago
0
Make ComBat script accept the same format as Confounded

#57 jdayton3 closed 6 years ago
0
Add command line arguments to README

#56 edj4960 closed 5 years ago
0
Update documentation

#55 jdayton3 closed 6 years ago
0
Add regularization to the discriminator

#54 jdayton3 closed 5 years ago
1
Add a LICENSE

#53 jdayton3 opened 6 years ago
1
Update prospectus

#52 jdayton3 closed 6 years ago
0
Start a project journal

#51 jdayton3 closed 6 years ago
2
Increase code size based on input size

#50 jdayton3 closed 5 years ago
0
Prevent the discriminator from overfitting

#49 jdayton3 closed 5 years ago
0
Guess a good encoded layer size

#48 jdayton3 opened 6 years ago
0
Document command-line args in readme

#47 jdayton3 closed 5 years ago
1
Remove the meta columns command line option

#46 jdayton3 closed 6 years ago
0
Lambda value for loss tradeoff

#45 jdayton3 closed 5 years ago
0
Specify Output File in Command Line

#44 edj4960 closed 6 years ago
0
Make unit tests for helper functions

#43 jdayton3 opened 6 years ago
0
Specify output path in command line

#42 jdayton3 closed 6 years ago
0
Resolve deprecation warnings

#41 jdayton3 closed 6 years ago
0
One-step metrics script

#40 jdayton3 opened 6 years ago
0
Parameterize batch column name

#39 jdayton3 closed 5 years ago
0
Make Confounded work with RNA-Seq data

#38 jdayton3 closed 6 years ago
0
Remove junk comments

#37 jdayton3 closed 6 years ago
0
Quick start demo

#36 jdayton3 closed 5 years ago
1
Command Line Options Added

#35 edj4960 closed 6 years ago
2
Throws error when not all str columns are given to META_COLS

#34 edj4960 closed 6 years ago
1
Update to Python3

#33 edj4960 closed 6 years ago
2
Only runs on 2 Batches error

#32 edj4960 closed 6 years ago
1
Put training into the network class definition

#31 jdayton3 opened 6 years ago
0
Fix the final activation function

#30 jdayton3 closed 6 years ago
1
Parameterize autoencoder depth

#29 jdayton3 opened 6 years ago
0
Encapsulate the neural networks

#28 jdayton3 closed 6 years ago
0
Infer some parameters

#27 jdayton3 closed 6 years ago
0
Predict MNIST digit

#26 jdayton3 closed 6 years ago
1
Fix the final activation function

#25 jdayton3 closed 6 years ago
1
Benchmark against distribution-matching resnet

#24 jdayton3 closed 5 years ago
1
Variable meta columns in input data

#23 jdayton3 closed 6 years ago
0