jdherman/ptreeopt - Githubissues

Policy Tree Optimization

Heuristic policy search for control of dynamic systems. Uses genetic programming to develop binary trees relating observed indicator variables to actions, either real-valued or discrete. A simulation model serves as the objective function.

Requirements: NumPy, PyGraphviz (optional). The example model also uses pandas and Matplotlib but these are not strictly required.

Citation: Link to paper

Herman, J.D. and Giuliani, M. Policy tree optimization for threshold-based water resources 
management over multiple timescales, Environmental Modelling and Software, 99, 39-51, 2018.

The full set of experiments and data are available in the paper branch. Note the API has since changed in the main branch.

Installation: (experimental) pip install -i https://test.pypi.org/simple/ ptreeopt

Quick Start

This example develops a control policy based on a simulation model of Folsom Reservoir.

import numpy as np
from folsom import Folsom
from ptreeopt import PTreeOpt
import logging

np.random.seed(17) # to be able to replicate the results

model = Folsom('folsom/data/folsom-daily-w2016.csv', 
                sd='1995-10-01', ed='2016-09-30', use_tocs = False)

algorithm = PTreeOpt(model.f, 
                    feature_bounds = [[0,1000], [1,365], [0,300]],
                    feature_names = ['Storage', 'Day', 'Inflow'],
                    discrete_actions = True,
                    action_names = ['Release_Demand', 'Hedge_90', 'Hedge_80', 
                    'Hedge_70', 'Hedge_60', 'Hedge_50', 'Flood_Control'],
                    mu = 20, # number of parents per generation
                    cx_prob = 0.70, # crossover probability
                    population_size = 100,
                    max_depth = 7
                    )

logging.basicConfig(level=logging.INFO,format='[%(processName)s/%(levelname)s:%(filename)s:%(funcName)s] %(message)s')

# With only 1000 function evaluations this will not be very good
best_solution, best_score, snapshots = algorithm.run(max_nfe=1000, 
                                                 log_frequency=100,
                                                 snapshot_frequency=100)

The logging module will print to the console every log_frequency function evaluations. snapshots is a dictionary containing keys 'nfe', 'time', 'best_f', 'best_P' (number of function evaluations, elapsed time, best objective function value, and best policy tree). Each key points to a list of length max_nfe/snapshot_frequency. The snapshots are used for convergence information, and are typically saved to a file for later analysis:

import pickle
pickle.dump(snapshots, open('snapshots.pkl', 'wb'))

model.f is a simulation model that will be evaluated many times. The simulation model must be set up to receive a policy and return an objective function value:

def f(P):
  # ...
  for t in range(T):
    # observe indicators x1,x2,x3
    action = P.evaluate([x1,x2,x3]) # returns a string from `action_names`

    if action == 'something':
      # ...
    if action == 'something_else':
      # ...

  return objective # assumes minimization

The Folsom simulation model (link) gives a more detailed example.

Functions for plotting results are described in a separate readme.

Parallelization

The example above runs in serial. Function evaluations can also be parallelized using either multiprocessing or mpi4py:

from ptreeopt import MultiprocessingExecutor

with MultiprocessingExecutor(processes=4) as executor:
    best_solution, best_score, snapshots = algorithm.run(max_nfe=1000, 
                                                 log_frequency=100,
                                                 snapshot_frequency=100,
                                                 executor=executor)

from ptreeopt import MPIExecutor

with MPIExecutor() as executor:
    best_solution, best_score, snapshots = algorithm.run(max_nfe=1000,
                                                 log_frequency=100,
                                                 snapshot_frequency=100,
                                                 executor=executor)

Then run mpirun -n 4 python -m mpi4py.futures mpi_example.py on the command line or in a cluster job script. See the examples for more details. This is generational parallelization, meaning that the number of processors should not exceed the population size.