jeffdaily parasail issues

jeffdaily / parasail

Pairwise Sequence Alignment Library

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issues

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Indexing error in alphabet_aliases

#107 shenker opened 1 month ago
1
figure out the similarity percentage of alignment

#106 Huilin-Li opened 2 months ago
0
Comments/ questions about fatal flaw in gap penalties for my use cases

#105 rcedgar closed 3 months ago
2
Can DNA alignment traceback result comply with HGVS 3' rule?

#104 GooJan opened 9 months ago
7
choosing among same-score alignments

#103 notestaff opened 11 months ago
5
enable cpuid for non-x86, non-arm, non-ppc archs.

#102 mr-c closed 1 year ago
3
C99 cleanups

#101 pb-dseifert closed 1 year ago
2
MAPQ should be 0 for unmapped reads

#100 palakpsheth closed 1 year ago
4
segfaults when using (some) profile functions

#99 brendanf closed 1 year ago
9
Out-of-bounds memory corruption

#98 stupendousMan closed 1 year ago
0
semi-global `parasail_sg_dx` not reporting `beg_ref` correctly

#97 nh13 opened 1 year ago
0
-t 24 not working threading

#96 jianshu93 opened 1 year ago
21
sg_qe_de – alignment extension?

#95 h-2 closed 2 years ago
3
Fix compiler/linker support of SIMD instructions with -Wall

#94 emollier closed 2 years ago
0
Kind of CIGAR

#93 c0ntradicti0n opened 2 years ago
2
Make configuring OpenMP optional

#92 jvkersch closed 2 years ago
2
Failure linking against OpenMP on macOS

#91 jvkersch opened 2 years ago
0
Cross-compiling for arm64 on macOS (x86_64 host)

#90 rainbowgoblin closed 2 years ago
4
Parasail install failing on M1 Pro

#89 leecbaker opened 2 years ago
4
CIGAR in Banded Global Alignment

#88 zulal-b opened 2 years ago
0
configuration error on ubuntu

#87 kristin-watchmaker closed 3 years ago
4
parasail_aligner: NW - output all best alignments

#86 psheth-twist opened 3 years ago
2
Parasail on recent M1 Mac?

#85 pb-cdunn opened 3 years ago
3
Attempt to to align an empty string appears to cause a Floating point exception

#84 rsharris opened 3 years ago
6
install parasail on Mac

#83 sunway1999 opened 3 years ago
1
SIMDe v0.7.6 upgrade

#82 mr-c opened 3 years ago
9
Failed to build parasail on Mac OSx

#81 ksahlin closed 3 years ago
3
detection of AVX512

#80 changchengx opened 4 years ago
1
Different gap penalty for template and query

#79 Nil-Fernandez-Lojo opened 4 years ago
1
Fix spellings

#78 nileshpatra closed 3 years ago
2
Fix tarball

#77 SoapZA closed 4 years ago
12
Assertion error

#76 cnk113 closed 4 years ago
2
run time of app not scaling linearly with input file length

#75 christakahashi opened 4 years ago
5
Definition of 'alignment score'

#74 jvivian-atreca closed 4 years ago
2
Parasail-2.4 is slower

#73 nahmedraja opened 4 years ago
2
License clarification

#72 rekado opened 5 years ago
1
API request: return NULL from parasail_sequences_from_file upon error?

#71 jvkersch closed 4 years ago
4
ld

#70 traversc closed 5 years ago
0
Feature request: option for no gap penalty in target start and end of both target/query

#69 traversc opened 5 years ago
15
MSP

#68 rmhubley opened 5 years ago
1
Bug in CIGAR Construction

#67 nlfortier closed 5 years ago
1
Feature request: convex gap penalty

#66 ksahlin opened 5 years ago
3
support for alphabets with more than 256 symbols

#65 hernot opened 5 years ago
6
Question about gap open penalty for different vectorizations.

#64 jvkersch closed 5 years ago
8
CMake on MacOS; OSError: dlopen(libparasail.dylib, 6): image not found

#63 callumparr closed 5 years ago
5
support msys, mingw

#62 jeffdaily closed 5 years ago
1
Querying version of installed parasail?

#61 HenrikBengtsson closed 5 years ago
8
Question: API for getting aligned sequences, number of indels?

#60 jvkersch closed 6 years ago
7
Support for ARM64?

#59 philres closed 6 years ago
19
T and U are treated as mismatching nucleotides.

#58 Elmohound closed 5 years ago
5