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jeffdaily
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parasail
Pairwise Sequence Alignment Library
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Indexing error in alphabet_aliases
#107
shenker
opened
1 month ago
1
figure out the similarity percentage of alignment
#106
Huilin-Li
opened
2 months ago
0
Comments/ questions about fatal flaw in gap penalties for my use cases
#105
rcedgar
closed
3 months ago
2
Can DNA alignment traceback result comply with HGVS 3' rule?
#104
GooJan
opened
9 months ago
7
choosing among same-score alignments
#103
notestaff
opened
11 months ago
5
enable cpuid for non-x86, non-arm, non-ppc archs.
#102
mr-c
closed
1 year ago
3
C99 cleanups
#101
pb-dseifert
closed
1 year ago
2
MAPQ should be 0 for unmapped reads
#100
palakpsheth
closed
1 year ago
4
segfaults when using (some) profile functions
#99
brendanf
closed
1 year ago
9
Out-of-bounds memory corruption
#98
stupendousMan
closed
1 year ago
0
semi-global `parasail_sg_dx` not reporting `beg_ref` correctly
#97
nh13
opened
1 year ago
0
-t 24 not working threading
#96
jianshu93
opened
1 year ago
21
sg_qe_de – alignment extension?
#95
h-2
closed
2 years ago
3
Fix compiler/linker support of SIMD instructions with -Wall
#94
emollier
closed
2 years ago
0
Kind of CIGAR
#93
c0ntradicti0n
opened
2 years ago
2
Make configuring OpenMP optional
#92
jvkersch
closed
2 years ago
2
Failure linking against OpenMP on macOS
#91
jvkersch
opened
2 years ago
0
Cross-compiling for arm64 on macOS (x86_64 host)
#90
rainbowgoblin
closed
2 years ago
4
Parasail install failing on M1 Pro
#89
leecbaker
opened
2 years ago
4
CIGAR in Banded Global Alignment
#88
zulal-b
opened
2 years ago
0
configuration error on ubuntu
#87
kristin-watchmaker
closed
3 years ago
4
parasail_aligner: NW - output all best alignments
#86
psheth-twist
opened
3 years ago
2
Parasail on recent M1 Mac?
#85
pb-cdunn
opened
3 years ago
3
Attempt to to align an empty string appears to cause a Floating point exception
#84
rsharris
opened
3 years ago
6
install parasail on Mac
#83
sunway1999
opened
3 years ago
1
SIMDe v0.7.6 upgrade
#82
mr-c
opened
3 years ago
9
Failed to build parasail on Mac OSx
#81
ksahlin
closed
3 years ago
3
detection of AVX512
#80
changchengx
opened
4 years ago
1
Different gap penalty for template and query
#79
Nil-Fernandez-Lojo
opened
4 years ago
1
Fix spellings
#78
nileshpatra
closed
3 years ago
2
Fix tarball
#77
SoapZA
closed
4 years ago
12
Assertion error
#76
cnk113
closed
4 years ago
2
run time of app not scaling linearly with input file length
#75
christakahashi
opened
4 years ago
5
Definition of 'alignment score'
#74
jvivian-atreca
closed
4 years ago
2
Parasail-2.4 is slower
#73
nahmedraja
opened
4 years ago
2
License clarification
#72
rekado
opened
5 years ago
1
API request: return NULL from parasail_sequences_from_file upon error?
#71
jvkersch
closed
4 years ago
4
ld
#70
traversc
closed
5 years ago
0
Feature request: option for no gap penalty in target start and end of both target/query
#69
traversc
opened
5 years ago
15
MSP
#68
rmhubley
opened
5 years ago
1
Bug in CIGAR Construction
#67
nlfortier
closed
5 years ago
1
Feature request: convex gap penalty
#66
ksahlin
opened
5 years ago
3
support for alphabets with more than 256 symbols
#65
hernot
opened
5 years ago
6
Question about gap open penalty for different vectorizations.
#64
jvkersch
closed
5 years ago
8
CMake on MacOS; OSError: dlopen(libparasail.dylib, 6): image not found
#63
callumparr
closed
5 years ago
5
support msys, mingw
#62
jeffdaily
closed
5 years ago
1
Querying version of installed parasail?
#61
HenrikBengtsson
closed
5 years ago
8
Question: API for getting aligned sequences, number of indels?
#60
jvkersch
closed
6 years ago
7
Support for ARM64?
#59
philres
closed
6 years ago
19
T and U are treated as mismatching nucleotides.
#58
Elmohound
closed
5 years ago
5
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