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jeffrichardchemistry / pyCheckmol

Application for detecting functional groups of a molecules.
GNU General Public License v3.0
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cheminformatics chemistry chemistry-development-kit qsar qspr

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pyCheckmol

This is an application for detecting functional groups of a molecule, created using features from the compiled checkmol. This application was created thinking about providing a molecular descriptor in Python language for use in machine learning models.

Install

Dependencies: python3-dev python3-pip
Ex: Distros based on Debian/ubuntu.

$ sudo apt-get install python3-dev python3-pip

Via github

$ git clone https://github.com/jeffrichardchemistry/pyCheckmol
$ cd pyCheckmol
$ python3 setup.py install
$ pycheckmol-config

How to use in argsparse format

After installing the python package, as shown in the above code, go to the pyCheckmol folder directory downloaded from this repository: .../pyCheckmol/pyCheckmol

Using smiles string

$ cd .../pyCheckmol/pyCheckmol
$ python3 pyCheckmol.py -smi 'CCC(=O)OCCNC(=O)CCN(C)CCOCCNCC'

image

Using molecules file path

$ cd .../pyCheckmol/pyCheckmol
$ python3 pyCheckmol.py --path /path/to/file