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jermp
/
sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
MIT License
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Submodule integration for piscem
#50
jermp
closed
2 months ago
7
Submodule integration for piscem
#49
NPSDC
closed
3 months ago
0
bring the 'submodule-integration-for-piscem' branch up to date with master
#48
jermp
closed
3 months ago
0
Piscem-cpp
#47
NPSDC
closed
3 months ago
20
Use universal visitors for const-ref saving
#46
adamant-pwn
closed
4 months ago
2
Suggest a suitable value for the parameter m
#45
jermp
opened
5 months ago
0
Partitioned phf
#44
jermp
closed
8 months ago
0
Allow for ignoring reverse complements when checking neighbours
#43
hmusta
closed
9 months ago
1
Avoid aborting during skew index construction when an empty bucket is detected
#42
jermp
closed
4 months ago
1
Synch
#41
jermp
closed
10 months ago
0
Include cstdint in gz
#40
adamant-pwn
closed
10 months ago
1
Support larger alphabets and k via generic kmer_t
#39
adamant-pwn
closed
2 months ago
41
Submodule integration for piscem
#38
jermp
closed
10 months ago
0
Partitioned phf
#37
rickbeeloo
closed
10 months ago
5
Merge branch
#36
rickbeeloo
closed
11 months ago
2
Larger k and generic alphabets in SSHash
#35
adamant-pwn
opened
11 months ago
1
Support 64-bit contig_id
#34
jermp
closed
10 months ago
28
Errors while indexing small test sequence sets with even values of m for small k
#33
hmusta
closed
11 months ago
3
failed to compile with v3.0.0 and the lastest commit
#32
shenwei356
closed
1 year ago
7
Writing hashes to output file
#31
tbenavi1
closed
1 year ago
1
provide access to underlying strings
#30
rob-p
closed
1 year ago
0
synch optimal path covering into dev
#29
jermp
closed
1 year ago
1
Parse Cuttlefish1 output
#28
jermp
closed
3 months ago
1
Minimizer absolute position in sequences
#27
jermp
opened
1 year ago
0
Dev
#26
jermp
closed
1 year ago
0
[Discussion] : Distribution via Bioconda
#25
rob-p
opened
1 year ago
15
detect Apple in CMakeLists.txt
#24
jermp
closed
1 year ago
0
bring dev up to date with master branch
#23
jermp
closed
1 year ago
0
Support for compiling on M1/M2 Macs
#22
rob-p
closed
1 year ago
19
Support larger k: up to 63 using __uint128_t
#21
jermp
closed
1 year ago
4
Just default to 128-bit hash codes for large-scale indexes
#20
jermp
closed
1 year ago
1
fixed warning on linux
#19
jermp
closed
2 years ago
0
Merge dev into master
#18
jermp
closed
2 years ago
0
Merge dev into master
#17
jermp
closed
2 years ago
0
error with 64-bit hash code
#16
PandorasRed
closed
2 years ago
17
question about input data
#15
PandorasRed
closed
2 years ago
2
Dev
#14
jermp
closed
2 years ago
0
Dev
#13
jermp
closed
2 years ago
0
Dev
#12
jermp
closed
2 years ago
0
SSHash as a C++ API / library
#11
jamshed
closed
2 years ago
42
External memory construction seems too high
#10
rob-p
closed
2 years ago
11
No queries being run
#9
jnalanko
closed
2 years ago
5
fixed corner case for tiny files where buckets might be all singleton…
#8
jermp
closed
2 years ago
0
Segmentation fault
#7
jnalanko
closed
2 years ago
6
move shared code into file_merging_iterator.hpp
#6
jermp
closed
2 years ago
0
Ext mem build
#5
jermp
closed
2 years ago
0
Permute and reverse-complement the strings to minimize the number of abundance runs
#4
jermp
closed
2 years ago
0
Default constructor to the iterator
#3
shokrof
closed
2 years ago
5
Abundances
#2
jermp
closed
2 years ago
0
Error: inlining failed in call to ‘always_inline’
#1
yifangt
closed
2 years ago
6
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