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jeromekelleher
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sc2ts-paper
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Correct funding source for Ben Jeffery
#202
jeromekelleher
opened
1 year ago
0
Update README.md - add virological link
#201
hyanwong
closed
1 year ago
0
Update README.md
#200
hyanwong
closed
1 year ago
0
Investigating false positives
#199
hyanwong
opened
1 year ago
0
Fill out the README file in this repo
#198
hyanwong
closed
1 year ago
2
Document trivial filename change for wide and long ARGs
#197
hyanwong
closed
1 year ago
0
Put tanglegram-creating code into notebook
#196
hyanwong
closed
1 year ago
1
Cite recombinhunt preprint
#195
jeromekelleher
opened
1 year ago
0
Cite recombination opinion piece
#194
jeromekelleher
opened
1 year ago
0
"Strain" terminology
#193
hyanwong
opened
1 year ago
0
Full read tweaks2
#192
jeromekelleher
closed
1 year ago
0
Update false positive plot
#191
hyanwong
closed
1 year ago
0
Spell check
#190
jeromekelleher
closed
1 year ago
1
Clarify reversions
#189
jeromekelleher
closed
1 year ago
0
Tweak imputation
#188
jeromekelleher
closed
1 year ago
0
Add summaries of "Majority Delta" node
#187
hyanwong
closed
1 year ago
0
Fix spaces
#186
jeromekelleher
closed
1 year ago
0
Update plots to incorporate false positive subgraph
#185
hyanwong
closed
1 year ago
0
Update figure legend
#184
szhan
closed
1 year ago
1
Change mutation notation?
#183
hyanwong
closed
1 year ago
4
Update caption for s4
#182
jeromekelleher
closed
1 year ago
1
Add forward refs to FP section
#181
jeromekelleher
closed
1 year ago
6
Simplify some things in the LS section
#180
jeromekelleher
closed
1 year ago
0
Remove spaces
#179
jeromekelleher
closed
1 year ago
0
WIP notebook
#178
jeromekelleher
closed
1 year ago
0
Fig 1 legend: do we need to explain mutation labels?
#177
hyanwong
closed
1 year ago
4
Minor visual improvements for figs 1 & 6
#176
hyanwong
closed
1 year ago
7
Remove dotted arrows in panel C
#175
szhan
closed
1 year ago
0
Make plots work with sc2ts.utils
#174
hyanwong
closed
1 year ago
0
Use standard terminology for inherited state
#173
jeromekelleher
closed
1 year ago
3
Make texts in panel C orange
#172
szhan
closed
1 year ago
0
Reset hyperlinks
#171
hyanwong
closed
1 year ago
0
Minor issue: hyperref inline links to supplementary figs links to wrong section
#170
hyanwong
closed
1 year ago
1
Tidy up the mutational spectrum plot
#169
hyanwong
closed
1 year ago
0
Remove unhelpful UPGMAs and edge counts
#168
jeromekelleher
closed
1 year ago
0
Addressed several comments from Sally
#167
szhan
closed
1 year ago
0
Sort out mutations
#166
jeromekelleher
closed
1 year ago
0
Clarify edge parents
#165
jeromekelleher
closed
1 year ago
0
Define mutation process
#164
jeromekelleher
closed
1 year ago
0
Finalise (?) intro
#163
jeromekelleher
closed
1 year ago
0
Update analysis notebook to add Wide ARG analysis at end
#162
hyanwong
closed
1 year ago
0
Section 2.5 query for Katherine
#161
jeromekelleher
closed
1 year ago
1
Update LS HMM section
#160
jeromekelleher
closed
1 year ago
0
Batch of updates from Sally
#159
jeromekelleher
closed
1 year ago
0
Remove spaces
#158
jeromekelleher
closed
1 year ago
0
Finish up Sally's comments
#157
jeromekelleher
closed
1 year ago
0
Sally's changes to Figure 1 (sc2ts schematic)
#156
hyanwong
closed
1 year ago
38
Tackle False positives
#155
jeromekelleher
closed
1 year ago
1
Authors and other stuff
#154
jeromekelleher
closed
1 year ago
0
Migrate s4.7 notebooks to sc2ts repo
#153
jeromekelleher
opened
1 year ago
0
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