jhawkey IS_mapper issues

jhawkey / IS_mapper

IS mapping software

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issues

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Example results not exactly the same as output?

#54 arptier opened 2 days ago
0
No hits found

#53 Oelsakha opened 1 year ago
0
Raw reads

#52 Oelsakha opened 1 year ago
0
Apply to draft genome

#51 fasemoreakinyemi opened 2 years ago
0
ISs inserted into other ISs

#50 SamuelGreenrod closed 2 years ago
1
Unable to compile one table for all results from compiled_table.py?

#49 safinaARK closed 2 years ago
1
Nature of Biopython incompatibility

#48 verdurin closed 2 years ago
1
Example code does not run

#47 Jewekks closed 3 years ago
0
x co-ordinate = -1

#46 SamuelGreenrod closed 2 years ago
4
No regex found for (*has my fastq read names*), unable to pair reads

#45 snehamurthy21 closed 3 years ago
2
BioAlphabet is obsolete

#44 joshuakirsch closed 3 years ago
5
UnboundLocalError: local variable 'm' referenced before assignment (probably another edge case)

#43 rpetit3 closed 4 years ago
2
Insertion site detected between first ([0]) and second ([1]) feature causes last feature ([-1]) to be selected

#42 rpetit3 closed 4 years ago
5
run_commands.CommandError

#41 swilde1 closed 4 years ago
2
New release for conda

#40 rpetit3 closed 4 years ago
4
No paired reads found

#39 YiweiZhu closed 5 years ago
1
set min_range and max_range args to be a float

#38 rpetit3 closed 5 years ago
0
Conda install

#37 rpetit3 closed 5 years ago
7
Problems with illumina reads

#36 diaz13 opened 5 years ago
0
quick fix for issue #31

#35 aschuerch closed 5 years ago
0
How to run this???? It shows error

#34 GuptaTanay closed 6 years ago
1
Problems with references consisting of more than one chromosome

#33 Jgruetzke closed 6 years ago
1
how to make a .gbk format reference genome

#32 ytguojian closed 6 years ago
0
create_genbank_table.py arguments

#31 logan-fink closed 5 years ago
3
added 'scripts/ismap.py' to the list of scripts to copy to /bin

#30 pescobar opened 6 years ago
0
right merged bed file empty causes create_typing_out.py to fail

#29 laurencowley closed 5 years ago
2
alternative install

#28 laurencowley closed 6 years ago
2
IS_mapper failing at create_typing_out.py: list index out of range

#27 AxelJa closed 6 years ago
3
Need help concerning the IS queries

#26 ldeblais closed 7 years ago
1
pip install without cloning repo....

#25 andersgs closed 7 years ago
1
Problem with gbk file at the compiled_table.py stage.

#24 rahimrajwani closed 7 years ago
3
create_typing_out.py returns "ValueError: More than one record found in handle"

#23 necoli1822 closed 7 years ago
2
change citation link from preprint to BMC paper in README

#22 katholt closed 7 years ago
1
Identify insertion sites

#21 adam-lab closed 7 years ago
1
Samtools version flexibility

#20 andersgs closed 7 years ago
2
Fi

#19 areejalsheikh closed 7 years ago
2
Incorrect version number displaying

#18 jhawkey closed 7 years ago
1
ISmapper failing at create_typing_out.py

#17 laurencowley closed 5 years ago
4
Segmentation fault with later versions of Bedtools

#16 jhawkey closed 7 years ago
1
is there any way to allow IS mapper to accept Locus Identifiers of any length?

#15 kwongj closed 8 years ago
1
ISmapper doesn't seem to like multi-sequence references?

#14 kwongj closed 5 years ago
4
Samtools view truncated file

#13 rrwick closed 3 years ago
0
Various bug fixes

#12 rrwick closed 7 years ago
0
samtools requirement is version-specific

#11 kwongj closed 7 years ago
4
temp folder

#10 ddomman closed 7 years ago
6
Accept multi-FASTA IS input

#9 rrwick closed 7 years ago
1
Fix

#8 jhawkey closed 8 years ago
0
Specify a folder for all the results

#7 tseemann closed 8 years ago
1
How do I give BWA more cpu cores?

#6 tseemann closed 8 years ago
1
Fix soft clips

#5 KatherineCox closed 9 years ago
0