jhhung PEAT issues - Githubissues

jhhung / PEAT

An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.

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issues

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PEAT paired/single --help returns 1 not 0

#37 tseemann opened 5 years ago
0
Please add --version option

#36 tseemann opened 5 years ago
0
Please make a new release (so many bugs fixed)

#35 tseemann closed 5 years ago
4
main.cpp: undefined reference to `IhandlerFactory<Fastq, std::tuple

#34 tseemann opened 5 years ago
3
segmentation fault on some SRA samples

#33 wwood opened 7 years ago
14
Out of range error

#32 wwood closed 7 years ago
2
add CI script

#31 CHChang810716 closed 7 years ago
0
fix build error

#30 CHChang810716 closed 7 years ago
0
--adapter_contexts seems to be a required option

#29 wwood closed 7 years ago
3
--out_gzip causing segmentation faults

#28 wwood closed 7 years ago
3
Report longest adapter sequences found

#27 habibr closed 8 years ago
1
Error compiling

#26 habibr closed 7 years ago
15
The 1.2.3 binaries do not exist (Error 404)

#25 tseemann closed 8 years ago
1
Support for .gz output files

#24 tseemann closed 8 years ago
2
peat_report.txt does not explain enough

#23 tseemann closed 9 years ago
3
PEAT 1.2 - Linux build failure

#22 tseemann closed 9 years ago
1
build fail on OS X

#21 xu-cheng closed 9 years ago
1
PEAT 1.0 core dumping on > 16 cpus (and slower on 16 vs 8)

#20 tseemann closed 9 years ago
1
PEAT always uses 2 cpus even with -n 1

#19 tseemann closed 9 years ago
1
Allow user to choose output R1 and R2 files (again)

#18 tseemann closed 9 years ago
2
/home/ralf/pokemon/src/ThreadPool/thread_pool.h: No such file or directory

#17 tseemann closed 9 years ago
2
Mac OSX binary for 1.1 release?

#16 tseemann closed 9 years ago
3
Fix another typo - Issue #1

#15 tseemann closed 9 years ago
1
Fix typo - Issue #8

#14 tseemann closed 9 years ago
1
Only uses 115% CPU even with -n 16

#13 tseemann closed 9 years ago
4
Compiling PEAT from source - minimum version of BOOST?

#12 tseemann closed 9 years ago
4
New core dumps even with -n 1 (with gdb stacktrace)

#11 tseemann closed 9 years ago
3
Progress output to stderr

#10 tseemann closed 9 years ago
2
Works with -n 1 but core dumps with -n > 1 (multi threading)

#9 tseemann closed 9 years ago
1
Typo in PEAT single

#8 tseemann closed 9 years ago
0
Need a summary report of what was trimmed

#7 tseemann closed 9 years ago
3
Support gzip input and output files

#6 tseemann closed 9 years ago
3
Allow user to choose output R1 and R2 files

#5 tseemann closed 9 years ago
1
The --help should tell us that it supports FASTA too

#4 tseemann closed 5 years ago
1
Paired reads aren't interleaved in STDOUT mode!

#3 tseemann opened 9 years ago
2
Core dump when given gzipped FASTQ files

#2 tseemann closed 9 years ago
4
Typo in "PEAT paired" help

#1 tseemann closed 9 years ago
0