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jhsiao999 / peco

Predict cell cycle phase in a continuum from single-cell RNA-seq data
https://jhsiao999.github.io/peco/
GNU General Public License v3.0
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10X prediction example #43

Open kasperdanielhansen opened 4 years ago

kasperdanielhansen commented 4 years ago

IMPORTANT

The package could benefit a TON by demonstrating peco on a separate 10X dataset. We have plenty available in Bioconductor. Perhaps look in TENxPBMCData for something small (~4k cells). This will show a user how you need to deal with gene names, normalization etc etc. and also show an application to 10X.

pcarbo commented 4 years ago

@jdblischak @jhsiao999 Would either of you be able to put together a peco example using the TENxPBMCData? If one of you could put together an R script, I could rework it into a vignette.