search

jhsiao999 / peco

Predict cell cycle phase in a continuum from single-cell RNA-seq data
https://jhsiao999.github.io/peco/
GNU General Public License v3.0
12 stars 4 forks source link
cell-cycle single-cell-rna-seq

readme

Travis-CI Build Status AppVeyor build status CircleCI build status License: GPL v3

peco

peco is an R package for PrEdicting Cell cycle prOgression in a continuum using scRNA-seq data. peco provides functions to build a training data set and predict cell cycle on a continuum.

Installation

To install and load the package, run:

install.packages("devtools")
devtools::install_github("jhsiao999/peco")
library(peco)

For for a detailed illustration of peco, see the vignette.

Contact

Please contact Joyce Hsiao at joyce.hsiao1@gmail.com for questions on the package or the methods.

How to cite

Hsiao, C. J., Tung, P., Blischak, J. D., Burnett, J., Dey, K. K., Barr, A. K., Stephens, M., and Gilad, Y. (2020). Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis. Genome Biology, 30(4): 611-621, doi:10.1101/gr.247759.11

License

Copyright (c) 2019-2020, Joyce Hsiao.

All source code and software in this repository are made available under the terms of the GNU General Public License. See file LICENSE for the full text of the license.