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The dataset types in the gEAR portal are nice and tidy:
```
mysql> select dtype, count(dtype) from dataset group by dtype;
+-----------------------+--------------+
| dtype | coun…
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Hi,
I just want to ask , can we use CellBender for Single Cell Gene Expression Flex Fixed RNA Profiling (FRP) seq samples to remove backgroud noise / Ambient RNA / empty Droplets because this seq is…
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Carried over from #958
- [398e34a9-8736-4b27-a9a7-31a47a67f446](https://cellxgene.cziscience.com/collections/398e34a9-8736-4b27-a9a7-31a47a67f446)
- `kit` should be used to update `EFO:0008913`…
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1) possibility: add option not split out by strand. in a lot of experiments, the strand is not really important, it is basically random which strand you read from
2) possibility: investigate cases …
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Hello! I am using the scregclust package to analyze regulatory modules in single-cell RNA-seq data from mice, but I encountered an issue. Since scregclust_format defaults to using human-specific lists…
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For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
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Thank you for developing and sharing this tool! I encountered some issues while using cytotrace2 with my Seurat object.
I’m trying to run cytotrace2 on a subset of cells from a large single-cell RN…
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## Aim of the project
This project aims to have full single-cell transcriptomics and tissue proteome expression profiles across different species. These are the possible biological questions:
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Thank you very much for developing the excellent ATAC-seq package.
I'm encountering an issue with the part “Running footprinting scores”. I'm following your tutorial and using my own single-cell RNA…
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From my exposure to classic WGCNA and this package so far, it seems like classic WGCNA often assigns most genes to a module and leaves a very small grey module (especially when using filtered genes as…