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jinghuazhao / R

R packages
https://jinghuazhao.github.io/R/
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genetics imputation lmm

readme

R

pages-build-deployment

A summary

Shown below are links to packages I have maintained[^1], with individual files to be found from https://github.com/jinghuazhao/R.

See also documentation reformatted by datacamp, https://www.rdocumentation.org/: gap, gap.datasets, lmm, pan. tdthap.

Packages[^2] CRAN Vignette GitHub R package documentation
gap https://cran.r-project.org/package=gap gap[^3] https://github.com/cran/gap https://rdrr.io/cran/gap/
    jss
    manual
    shinygap
gap.datasets https://cran.r-project.org/package=gap.datasets   https://github.com/cran/gap.datasets https://rdrr.io/cran/gap.datasets/
gap.examples   gap.examples
    h2
    pedtodot
    rnews
lmm https://cran.r-project.org/package=lmm lmm https://github.com/cran/lmm https://rdrr.io/cran/lmm/
pan https://cran.r-project.org/package=pan pan https://github.com/cran/pan https://rdrr.io/cran/pan/
tdthap https://cran.r-project.org/package=tdthap tdthap https://github.com/cran/tdthap https://rdrr.io/cran/tdthap/
kinship[^4] https://cran.r-project.org/src/contrib/Archive/kinship/ kinship https://github.com/cran/kinship

It contains packages CGR which is not available from CRAN and kinship which has additional update.

Installation

You can install these packages either from CRAN, e.g.,

install.packages("pan", repos="https://cran.r-project.org")

or GitHub, 

library(devtools)
install_github("jinghuazhao/R/gap", build_vignettes = TRUE)

[^1]: Contributed work

> - Network Regression method in TWAS, [NeRiT](https://github.com/XiuyuanJin/NeRiT).
> - `g.binread` function, [**GGIR**](https://cran.r-project.org/package=GGIR) & [GGIRread](https://cran.r-project.org/web/packages/GGIRread/index.html).
> - [**ITHIM** injurymodel](https://github.com/ithim/injurymodel) through a hackathon at MRC.

[^2]: Featured CRAN task views:

> - Genetics: **gap**, **tdthap**
> - Meta-Analysis: **gap**
> - Social science: **lmm**, **pan**

[^3]: Additional use can be found from a package vignette pQTLtools.

[^4]: Windows package kinship_1.1.4.zip is built from kinship_1.1.4.tar.gz via https://win-builder.r-project.org/.