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jjmccollum
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teiphy
A Python package for converting TEI XML collations to NEXUS, BEAST 2.7 XML, and other formats
MIT License
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example with fewer witnesses and add into paper
#40
rbturnbull
closed
2 years ago
8
clean up XML file
#39
rbturnbull
closed
2 years ago
1
system tests in CI
#38
rbturnbull
closed
2 years ago
8
:zap: using rich to enhance help output
#37
rbturnbull
closed
2 years ago
1
adding help text for input and output in main.py
#36
rbturnbull
closed
2 years ago
1
Pyproject
#35
rbturnbull
closed
2 years ago
0
:abc: a few edits to the paper
#34
rbturnbull
closed
2 years ago
3
Black
#33
rbturnbull
closed
2 years ago
2
Docscli
#32
rbturnbull
closed
2 years ago
0
:abc: refactoring docs and reusing information from readme in the doc…
#31
rbturnbull
closed
2 years ago
0
start writing JOSS paper
#30
rbturnbull
closed
2 years ago
8
:abc: adding in api reference to docs. (issue #27)
#29
rbturnbull
closed
2 years ago
0
testing coverage to 100%
#28
rbturnbull
closed
2 years ago
5
autogenerate docs from classes
#27
rbturnbull
closed
2 years ago
1
Simplecli
#26
rbturnbull
closed
2 years ago
0
Testing
#25
rbturnbull
closed
2 years ago
0
simplify CLI to one command
#24
rbturnbull
closed
2 years ago
1
refactor into separate files
#23
rbturnbull
closed
2 years ago
6
Testing
#22
rbturnbull
closed
2 years ago
0
changing the name of the py directory
#21
rbturnbull
closed
2 years ago
1
add testing coverage to github actions and have a badge in the readme and docs
#20
rbturnbull
closed
2 years ago
1
think about name?
#19
rbturnbull
closed
2 years ago
1
add docstrings with consistent format
#18
rbturnbull
closed
2 years ago
0
:tv: adding lxml to dependencies in a pyproject.toml. Addresses issue #5
#17
rbturnbull
closed
2 years ago
0
add code of conduct and contributing info
#16
rbturnbull
closed
2 years ago
4
decide on licence
#15
rbturnbull
closed
2 years ago
3
refactor for calling directly in python rather than from the command line
#14
rbturnbull
closed
2 years ago
1
make class names start with capital letters
#13
rbturnbull
closed
2 years ago
1
release to PyPI
#12
rbturnbull
closed
2 years ago
0
deploy docs with github actions
#11
rbturnbull
closed
2 years ago
4
add sphinx docs and move info from readme there
#10
rbturnbull
closed
2 years ago
6
convert from argparse to typer
#9
rbturnbull
closed
2 years ago
3
add github actions for unit tests
#8
rbturnbull
closed
2 years ago
1
add unit tests
#7
rbturnbull
closed
2 years ago
4
add black pre-commit hook
#6
rbturnbull
closed
2 years ago
4
convert to using pyproject.toml/poetry
#5
rbturnbull
closed
2 years ago
2
Add export methods for other output formats
#4
jjmccollum
closed
2 years ago
14
Support StatesFormat=Frequency for NEXUS
#3
jjmccollum
closed
2 years ago
1
Support filling corrector text based on previous witness's text
#2
jjmccollum
closed
2 years ago
1
Anticipate encoding of ambiguous readings using `witDetail`
#1
jjmccollum
closed
2 years ago
2
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