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jlbuerer / LaMIRA

Lariat Mapping by Inverted Read Alignment
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Is there a version for hg38 genome? #8

Closed santataRU closed 8 months ago

santataRU commented 8 months ago

Dear developer,

Is there a version for the hg38 genome?

Thanks, Xiao

jlbuerer commented 8 months ago

The software functions independent of any particular genome or annotation. You simply need to provide the bowtie index and GTF annotation file for the genome you would like to use for mapping.

santataRU commented 8 months ago

Hi, Jlbuerer,

Thank you very much for your help!

The input fastq requires uniform length and it is suggested that reads are trimmed to uniform length in the adaptor trimming step, what adaptor trimming tool you used, and what arguments you used in the command line to trim reads to uniform length?

Regards,

Xiao

jlbuerer commented 8 months ago

I use fastp for adapter trimming