PyFMGUI

Currently the version in active development is located in the following fork:

https://github.com/DyNaMo-INSERM/PyFMGUI_DyNaMo.git

Here you will find the latest release of the code being maintained by the team at the DyNaMo-INSERM lab.

Introduction

PyFMGUI is an application for the analysis of force microscopy data capable of analyzing Nanoscope and JPK AFM files.

The following analysis routines are supported:

• Thermal tune calibration (JPK .tnd files)
• Elastic fit (Hertz Model fit)
• Viscoelastic fit
• Piezo characterization
• Viscous drag correction
• Microrheology (DMA) analysis

If you have any suggestions, comments or experience any issues. Please open an issue on this repository.

https://github.com/jlopezalo/PyFMGUI/issues

Run software

A zip containing the frozen application can be found and downloaded here:

https://doi.org/10.5281/zenodo.8301684

To run, extract the contents of the .zip and run the main.exe file.

To run from source

• Clone the repository

  git clone https://github.com/jlopezalo/PyFMGUI.git
  cd ./PyFMGUI

• Create an environment with python 3.9

  conda create -n yourenvname python=3.9 
  conda activate yourenvname

• Install the dependencies from requirements.txt

  pip install -r requirements.txt

• run src/main.py

  python src/main.py

Generate executables

If you wish to do any changes to the code and freeze them. You can use PyInstaller and run the main.spec file (Windows).

python -m PyInstaller main.spec

To Do

• Generate documentation with examples and tutorials
• Improve multiprocessing
• Improve tree control for files (allow to load multiple directories at once and assign folder as group)
• Allow to save analysis sessions and load them after
• Improve error handling and logging