Move conv folders to a work folder

jmtyszka / bidskit

Utility functions for working with DICOM and BIDS neuroimaging data

MIT License

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Move conv folders to a work folder #15

Closed jmtyszka closed 6 years ago

jmtyszka commented 6 years ago

Keeping the temporary conversion folders out of the final BIDS source tree avoids validation errors. Ultimate goal is to handle dependencies in the conversion in the same way as make to handle the addition of new subjects and sessions to the dicom directory.

jmtyszka commented 6 years ago

dcm2niix now stages conversion into work/conversion folder tree. Protocol translator JSON file now placed in derivatives/conversion folder, mimicking fmriprep and mriqc BIDS apps.