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jmtyszka / bidskit

Utility functions for working with DICOM and BIDS neuroimaging data
MIT License
61 stars 41 forks source link
bids-format conversion dicom fmri-preproc mri neuroimaging nifti-images

readme

BIDSKIT

Python utilities for converting from DICOM to BIDS neuroimaging formats.

The bidskit console command takes a directory tree containing imaging series from one or more subjects (eg T1w MPRAGE, BOLD EPI, Fieldmaps), converts the imaging data to Nifti-1 format with JSON metadata files (sidecars) and populates a directory tree according to the latest BIDS specification.

Documentation

Installation Instructions

Quick Start Guide

Useful Features

Flywheel Support

Bugs and Feature Requests

Let us know about bugs and feature requests through this repo's GitHub Issues page.

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