Closed GoogleCodeExporter closed 8 years ago
I seem to be having a similar problem, uploaded a tab delimited text file (I
hope this is the correct format as I couldn't find any hits for "ta separated
file" in google), for staphylococcus gene expression data using gene symbols as
the IDs. Loads in fine but no actual pathways are highlighted, even though I
know there are plenty of KEGG pathways because of my DAVID analysis. Not sure
if all the settings when loading in are correct as the tutorial has no
information on what settings to use. Using Mac OSX 10.8
I would very much appreciate any answers from the tool designers, I expect I'm
putting something in wrong but it's very hard to know without any clearer
instructions.
Original comment by Jo.Mora...@gmail.com
on 21 Aug 2013 at 2:27
I have the same problem with E.coli dataset using UniProt Identifiers to search
for pathways doesn´t show any results and only mapped 2 genes of 1900
identifiers. Maybe only the listed Model Organisms are available which are
visible in "Repositiory" and "Browse Pathway" Options?
If so, is there a way or work-around to get the Data for other organisms?
What is the default identifier to use?
Help would be appreciated
Original comment by treit...@gmail.com
on 24 Sep 2013 at 8:40
Hi, I have the same problem with a human data set as Jo.Mora. Did anyone of you
find a solution? Thanks for any help!
Original comment by MELLI.LA...@gmail.com
on 8 Oct 2013 at 10:48
CytoKegg does not support gene symbols yet so when the tool tries to map the
gene ids, no hits are found. I will add an error message for such cases.
Currently, the mapping tool is based on the KEGG API
(http://www.kegg.jp/kegg/rest/keggapi.html) which does not support gene symbols
but ncbi-gi, ncbi-geneid and uniprot identifiers.
I would suggest you to map your gene list to one of the identifiers listed
above.
Original comment by seceval...@gmail.com
on 20 Jan 2014 at 2:16
Original issue reported on code.google.com by
omosk...@gmail.com
on 19 Aug 2013 at 4:12