Using my rna-seq data, I did select mTOR pathway genes, and I did import the gene list including their expression values to cytokegg. However any genes in the list could not be mapped on mTOR pathway by cytokegg.

jmvillaveces / cytokegg

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What steps will reproduce the problem?
1. In pathway selection, any genes could not be mapped on mTOR pathway even 
though part of genes in the list are involved in mTOR pathway entries of KEGG. 
2.
3.

What is the expected output? What do you see instead?
I think at least, the same genes in between my gene list and KEGG entry for 
mTOR pathway should be mapped in cytokegg. 

What version of the product are you using? On what operating system?
Cytokegg 0.0.5 / Cytoscape 3.0.2 / Mac OS X

Please provide any additional information below.
I attached my tab delimited txt file.

Original issue reported on code.google.com by taehy...@gmail.com on 17 Dec 2013 at 8:59

Attachments:

mTOR_genes.txt

CytoKegg does not support gene names yet so when the tool tries to map the gene ids, no hits are found. I will add an error message for such cases. In the mean time, please try ncbi-gi, ncbi-geneid or uniprot identifiers.

jmvillaveces / cytokegg

Using my rna-seq data, I did select mTOR pathway genes, and I did import the gene list including their expression values to cytokegg. However any genes in the list could not be mapped on mTOR pathway by cytokegg. #2