jni / pia-tracking

Scripts to work with Pia Larsson's platelet tracking data
BSD 3-Clause "New" or "Revised" License
4 stars 0 forks source link

Develop randomised/blind track quality scoring UI #11

Closed jni closed 3 years ago

jni commented 4 years ago

It should not be super hard to write a script that:

This would actually be much easier to achieve than a general track editing interface, and would immediately allow us to estimate our tracking accuracy.

Over time, we can do more elaborate things like also estimating the “false negative” rate, ie how often a track ends when actually we can see the platelet in the next/previous frame.

Nick has example code for binding image annotations to keys here:

https://github.com/sofroniewn/image-demos/blob/master/examples/keiser_tiles.py

so this issue is all about the finicky extraction of 3D+t volumes, randomisation, etc, but there’s no show-stoppers there.

jni commented 3 years ago

This was done by @AbigailMcGovern in #15 and #21. There is still some cleanup to be done but I consider this issue closed. We can make a new issue for cleaning up the scripts and UI.