Changes
As this repo has multiple dependencies, which would be painful to install one by one, I have written bash scripts for installation and for uninstalling the necessary python environment. I have checked that this works with recent scripts (i.e., has necessary dependencies for segmentation, viewing tracks, and tracking with btrack). Installation requires git and miniconda/anaconda.
Installation
cd path/to/pia-tracking
bash ./install.sh
conda activate platelet-tracking
Removal
conda deactivate
bash ./uninstall.sh
NOTE: I wrote the uninstall.sh script because I had issues installing cv2 with pip and tried environments with various versions before installing with conda (which worked 🤷♀️). As a side note, I also had issues installing cv2 when I initially went to run the notebooks. It pretty much sucks!
Changes As this repo has multiple dependencies, which would be painful to install one by one, I have written bash scripts for installation and for uninstalling the necessary python environment. I have checked that this works with recent scripts (i.e., has necessary dependencies for segmentation, viewing tracks, and tracking with
btrack
). Installation requires git and miniconda/anaconda.Installation
Removal
NOTE: I wrote the
uninstall.sh
script because I had issues installingcv2
with pip and tried environments with various versions before installing with conda (which worked 🤷♀️). As a side note, I also had issues installingcv2
when I initially went to run the notebooks. It pretty much sucks!ping @jni