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johnabel
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gillespy
A Python package for stochastic model building and simulation. Published as Abel et al., IEEE Life Sci Lett 2017.
https://dx.doi.org/10.1109/LLS.2017.2652448
GNU General Public License v3.0
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Simulation fails from imported model that is serialized with gillespy
#31
ahellander
opened
5 years ago
1
Error Code
#30
michelleingle
opened
6 years ago
1
Instantiation of models from xml string broken
#29
ahellander
opened
6 years ago
0
Working on bugfix for #21
#28
ahellander
opened
6 years ago
0
Fixing Python3 compatibility, and updating examples
#27
briandrawert
closed
6 years ago
0
add python3 compatibility
#26
scottgigante
closed
6 years ago
2
Merge pull request #10 from briandrawert/master
#25
johnabel
closed
7 years ago
0
Version 1.1
#24
briandrawert
closed
7 years ago
0
GillesPy 1.0 examples assume the .run argument "show_labels=False" but the updated version sets this by default to true.
#23
johnabel
closed
6 years ago
2
Add annotation back
#22
johnabel
closed
7 years ago
0
Model import from StochML broken
#21
ahellander
opened
7 years ago
3
time-dependent rate
#20
fccoelho
closed
7 years ago
2
Pushing 1.0 docs
#19
briandrawert
closed
7 years ago
0
Fix for volume changing, automatically convert to custom propensities
#18
briandrawert
closed
9 years ago
0
better importing of ODE data
#17
briandrawert
closed
9 years ago
0
Making the StochKitODE solver work
#16
briandrawert
closed
9 years ago
0
Setup needs absolute path when installing
#15
briandrawert
closed
9 years ago
0
Upstream changes for compatability with molnsutil
#14
ahellander
closed
9 years ago
0
GillspySolver can't use a negative seed
#13
ahellander
opened
9 years ago
4
GillspySolver does not set the seed if given as an argument
#12
ahellander
closed
9 years ago
1
gillespy.Model should have a method 'run'
#11
ahellander
closed
9 years ago
1
run should not print the outdir to stdout
#10
ahellander
closed
7 years ago
1
Non first-order mass action does not simulate correctly
#9
johnabel
closed
7 years ago
3
Adding model parameters - not a simple loop
#8
johnabel
closed
7 years ago
7
SBML support
#7
briandrawert
closed
7 years ago
1
Setting the seed
#6
johnabel
closed
9 years ago
4
ODE simulation does not return results
#5
briandrawert
closed
7 years ago
2
Johnbranch
#4
briandrawert
closed
9 years ago
0
reverting to most recent version
#3
briandrawert
closed
9 years ago
0
Correct Path to StochKit
#2
johnabel
closed
9 years ago
1
Import of module fails
#1
ahellander
closed
9 years ago
2