johnlees seer issues - Githubissues

johnlees / seer

sequence element (kmer) enrichment analysis

GNU General Public License v2.0

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issues

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src/*CmdLine.cpp: fix typos caught by lintian.

#79 emollier closed 2 years ago
1
Help: Input file for combineKmers

#78 Srividhya-Sainath closed 2 years ago
1
Fix GCC-11 Build Failure: include limits lib

#77 nileshpatra closed 3 years ago
1
terminate called after throwing an instance of 'std::logic_error'

#76 ayixon closed 4 years ago
4
Logistic and linear regression

#75 duhuipeng closed 4 years ago
1
seer running for a long time

#74 aajanow opened 4 years ago
1
Add pipe character to combineKmers

#73 johnlees closed 4 years ago
0
Do MDS in SEER from dist mat, or take previous MDS

#72 johnlees closed 6 years ago
1
Add MAF and AF into header

#71 johnlees opened 7 years ago
0
Force choice of PCs

#70 johnlees opened 7 years ago
0
Report lineage effects

#69 johnlees closed 6 years ago
1
Relax order of sam and seer file in mapping_to_phandango

#68 johnlees opened 7 years ago
0
seer_static_all segmentation fault?

#67 cizydorczyk closed 7 years ago
1
lots assigned pval of 386 by mapping_to_phandango.pl

#66 laurencowley closed 7 years ago
1
R_mds.pl not working

#65 samlipworth closed 7 years ago
6
Error: Degrees of freedom argument is -nan, but must be > 0

#64 mgalardini closed 7 years ago
5
filter_seer doesn't return a file with a header

#63 Mishmash-su opened 7 years ago
1
Seer: Can't stat input file: projection

#62 cizydorczyk closed 7 years ago
5
collect2: error: ld returned 1 exit status

#61 cizydorczyk closed 7 years ago
0
Segmentation fault when running seer

#60 nysdan closed 7 years ago
2
Managed to compile 1.1.4 in Linuxbrew

#59 tseemann closed 6 years ago
1
Lots of warnings about std::auto_ptr

#58 tseemann opened 7 years ago
1
PREFIX is blank, so getting -I/include etc

#57 tseemann closed 7 years ago
1
static_all 1.1.3 seer/kmds segfault at end

#56 tseemann opened 7 years ago
4
strange results with wald_p_val of 0 and lrt_p_val of 1

#55 flashton2003 closed 7 years ago
1
Incorrectly 'commented' as bad-chi square?

#54 flashton2003 closed 7 years ago
1
Discrepancy in usage

#53 flashton2003 closed 7 years ago
1
Difference between output and manual description of output

#52 flashton2003 closed 7 years ago
2
version-1.1.3 compile issue on Ubuntu 16.04

#51 campy1113 closed 7 years ago
3
Issues with mapping to phandango

#50 johnlees closed 7 years ago
1
Use new armadillo in travis-ci

#49 johnlees opened 7 years ago
0
seer in bioconda

#48 aschuerch closed 6 years ago
9
Index out of bounds

#47 OliCharity closed 7 years ago
7
p = 2 for t-test of continuous tests

#46 johnlees closed 7 years ago
0
Add better pheno file input

#45 johnlees closed 6 years ago
2
Relax hdf5 requirement

#44 johnlees closed 8 years ago
1
Remove stats filtering from kmds

#43 johnlees closed 8 years ago
0
Add likelihood-ratio test

#42 johnlees closed 8 years ago
0
error: Matrix inversion failed!

#41 aseetharam closed 8 years ago
2
Add extra association options

#40 johnlees closed 6 years ago
1
Read roary and vcf input

#39 johnlees closed 6 years ago
3
seer 'std::out_of_range' Error

#38 BoMatt closed 8 years ago
3
Error while running seer command

#37 aseetharam closed 8 years ago
5
Tag a new release (including binaries)

#36 tseemann closed 8 years ago
1
map_back should check reverse complement kmers

#35 johnlees closed 8 years ago
0
blast_top_hits.pl crashes with "Use uninitialized value..."

#34 dopapo closed 8 years ago
0
map_back crashes with no output

#33 mgalardini closed 8 years ago
4
filter_seer does not print sample names

#32 johnlees closed 8 years ago
0
A matrix inversion failed!

#31 RobertWeberRKI closed 8 years ago
20
kmds error

#30 shimbalama closed 8 years ago
19