If you're a current user of ADS to BibDesk, you will need to migrate to ads2bibdesk, a new project by Rui Xue. ads2bibdesk uses the ADS API and is compatible with modern versions of macOS and BibDesk.
To the community, thanks for using ADS to BibDesk and for contributing to it. ADS to BibDesk dates back to 2007 and was my first Python project. Over the years, I've gone from making science to making the infrastructure for science, which might account for why this bibliography tool hasn't seen much activity from me. I'm grateful, though, that the open source astronomy community has taken the ideas around streamlined bibliography capture and created new tools to make everyone more productive. I'm also grateful to ADS for their critical contributions to astronomy.
Today I'm archiving ADS to BibDesk. Head on over to ads2bibdesk_ and try it out.
Cheers, Jonathan
.. _ads2bibdesk: https://github.com/r-xue/ads2bibdesk
This is the command line edition of ADS to BibDesk, a tool for retrieving the bibtex, abstract and PDF of an astronomical journal article published on ADS <http://adsabs.harvard.edu> or arXiv.org <http://arxiv.org/archive/astro-ph> and add it to your BibDesk <http://bibdesk.sourceforge.net/>_ database.
ADS to BibDesk is a tool for retrieving the bibtex, abstract and PDF of an astronomical journal article published on ADS <http://adsabs.harvard.edu> or arXiv.org <http://arxiv.org/archive/astro-ph> and adding it to your BibDesk <http://bibdesk.sourceforge.net/>_ database.
ADS to BibDesk comes in two flavours: an Automator Service that you can use to grab papers in any app (e.g., in Safari, or Mail), or a command line app.
Developers: please read the CONTRIBUTING <https://github.com/jonathansick/ads_bibdesk/blob/master/CONTRIBUTING.md>_ document for details on how to build the ADS to BibDesk CLI/Service from source, make changes, and submit pull requests.
ADS to BibDesk can also be run directly from the command line. The command line script can be installed via::
python setup.py installYou may need to run the last command with sudo.
Once adsbibdesk is installed, you can call it with the same types of article tokens you can launch the Service with, e.g.,::
adsbibdesk 1998ApJ...500..525SA full summary of adsbibdesk commands is available via::
adsbibdesk --help1998ApJ...500..525S),0911.4956), orBesides the primary mode (adding a single paper to BibDesk, ADS to BibDesk has three other modes: previewing papers, updated preprints, and ingesting PDF archives into BibDesk.
Previewing Papers
Use the `-o` switch to simply download and view the PDF of an article without adding it to BibDesk. E.g.,::
adsbibdesk -o 1998ApJ...500..525S
Updating PreprintsRun ADS to BibDesk with the -u switch to find and update all astro-ph preprints in your BibDesk bibliography::
adsbibdesk -uTo restrict this update to a date range, you can use the --from_date (-f) and --to_date (-t) flags with dates in MM/YY format. For example, to update preprints published in 2012, run::
adsbibdesk -u --from_date=01/12 --to_date=12/12Note that this operation can take some time since we throttle requests to ADS to be a nicer robot.
PDF Ingest Mode
With the command-line ADS to BibDesk, you can ingest a folder of PDFs that originated from ADS into BibDesk.
This is great for users who have amassed a literature folder, but are just starting to use BibDesk.
This will get you started quickly.
You need the program `pdf2json <http://code.google.com/p/pdf2json/>`_ to use
this script. The easiest way to get pdf2json and its dependencies is through
`Homebrew <http://mxcl.github.com/homebrew/>`_, the Mac package manager.
Once homebrew is setup, simply run `brew install pdf2json`.
To run this workflow,::
adsbibdesk -p my_pdf_dir/
where `my_pdf_dir/` is a directory containing PDFs that you want to ingest.
Note that this workflow relies on a DOI existing in the PDF.
As such, it will not identify astro-ph pre-prints, or published papers older than a few years.
Typically the DOI is published on the first page of modern papers.
This method was inspired by a script by `Dr Lucy Lim <http://www.mit.edu/people/lucylim/BibDesk.html>`_.
License
-------
Copyright 2014 Jonathan Sick, Rui Pereira and Dan-Foreman Mackey
ADS to BibDesk is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
ADS to BibDesk is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with ADS to BibDesk. If not, see <http://www.gnu.org/licenses/>.