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jorainer / ensembldb

This is the ensembldb development repository.
https://jorainer.github.io/ensembldb
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Cannot find function transcriptToGenome #105

Closed ahdee closed 4 years ago

ahdee commented 4 years ago

Hi I'm getting a really strange error whereby when I try to invoke the function transcriptToGenome I get an error message that the function cannot be found? 

library(EnsDb.Hsapiens.v86)
transcriptToGenome()
Error in transcriptToGenome() : 
  could not find function "transcriptToGenome"
other attached packages:
 [1] knitr_1.24                kableExtra_1.1.0          acss_0.2-5                acss.data_1.0             doSNOW_1.0.18             snow_0.4-2                doParallel_1.0.11         iterators_1.0.9          
 [9] foreach_1.4.4             dplyr_0.8.3               jsonlite_1.6              stringr_1.3.0             EnsDb.Hsapiens.v86_2.99.0 chimeraviz_1.4.3          Gviz_1.22.3               Biostrings_2.46.0        
[17] XVector_0.18.0            ensembldb_2.2.2           AnnotationFilter_1.2.0    GenomicFeatures_1.30.3    AnnotationDbi_1.40.0      Biobase_2.38.0            GenomicRanges_1.30.3      GenomeInfoDb_1.14.0      
[25] IRanges_2.12.0            S4Vectors_0.16.0          BiocGenerics_0.24.0
jorainer commented 4 years ago

The version of ensembldb that you use does not yet have this functionality. These functions have been added in version 2.3.2. You should install a recent version of R (3.6.1) and Bioconductor/ensembldb.

ahdee commented 4 years ago

@jorainer oh yes thanks! too bad I can't install the latest version with my current R though. But thanks for the update.