jorainer / ensembldb

This is the ensembldb development repository.
https://jorainer.github.io/ensembldb
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Fix Rd warnings on Windows build machine #79

Closed jorainer closed 6 years ago

jorainer commented 6 years ago

Fix"

Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:55: file link 'GeneIdFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:58: file link 'GeneBiotypeFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:61: file link 'EntrezFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:64: file link 'TxIdFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:67: file link 'TxBiotypeFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:70: file link 'ExonIdFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:73: file link 'ExonRankFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:76: file link 'SeqNameFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:79: file link 'SeqStrandFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:83: file link 'GeneStartFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:84: file link 'TxStartFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:85: file link 'ExonStartFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:89: file link 'GeneEndFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:90: file link 'TxEndFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Deprecated.Rd:91: file link 'ExonEndFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/EnsDb-AnnotationDbi.Rd:75: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/EnsDb-exonsBy.Rd:157: file link 'exonsByOverlaps' in package 'GenomicFeatures' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/EnsDb-exonsBy.Rd:163: file link 'exonsByOverlaps' in package 'GenomicFeatures' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/EnsDb-exonsBy.Rd:195: file link 'exonsByOverlaps' in package 'GenomicFeatures' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/EnsDb-exonsBy.Rd:244: file link 'exonsByOverlaps' in package 'GenomicFeatures' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:47: file link 'GRangesFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:52: file link 'GeneIdFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:55: file link 'GeneStartFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:178: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:183: file link 'GRangesFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:269: file link 'GRangesFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp23lNoH/R.INSTALL183c2f3e1265/ensembldb/man/Filter-classes.Rd:380: file link 'GeneIdFilter' in package 'AnnotationFilter' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ensembldb.Rcheck/00install.out' for details.