bug while running tilde on other data

Hi Jonas,

Thanks for sharing your nice work.

I'm running tilde on my own data, I got a weird bug in which I cannot specify what's exactly the problem; here we are:

Traceback (most recent call last):
  File "devmain.py", line 10, in <module>
    main()
  File "devmain.py", line 6, in main
    real_main.main(argv)
  File "/Users/sarawasl/Documents/tilde/mai_version/main.py", line 157, in main
    run_program(program_settings)
  File "/Users/sarawasl/Documents/tilde/mai_version/main.py", line 133, in run_program
    fname_background_knowledge, filter_out_unlabeled_examples=False)
  File "/Users/sarawasl/Documents/tilde/mai_version/run/program_phase.py", line 37, in preprocessing_examples_keys
    prediction_goal)  # type: BackgroundKnowledgeWrapper
  File "/Users/sarawasl/Documents/tilde/mai_version/IO/parsing_background_knowledge.py", line 66, in parse_background_knowledge_keys
    for prolog_statement in logic_program:
  File "/anaconda3/lib/python3.7/site-packages/problog/program.py", line 249, in __iter__
    return iter(self._program())
  File "/anaconda3/lib/python3.7/site-packages/problog/program.py", line 234, in _program
    self.__program = self.parser.parseString(self.__string)
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 765, in parseString
    self._tokenize(string))))
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 829, in mapl
    return list(map(f, l))
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 763, in <lambda>
    return self.factory.build_program(mapl(lambda x: self._parse_statement(string, x),
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 760, in _parse_statement
    return self.collapse(string, tokens)
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 795, in collapse
    current_expr.parse(self)
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 866, in parse
    self.label_tokens(parser)
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 883, in label_tokens
    parser.label_tokens(self.string, self.tokens)
  File "/anaconda3/lib/python3.7/site-packages/problog/parser.py", line 735, in label_tokens
    raise ParseError(string, 'Expected binary operator', t.location)
problog.parser.ParseError: Expected binary operator at 5439:20.

As I understand, it seems that something wrong in my .bg file and prolog not able to parse it (I think so)

My .bg file contains something like:

subClassOf(HP:0010131, HP:0010126).
hasEntity(FYPO:0000004,CL:0000521).
hasQuality(FYPO:0000921,PATO:0000912).

Could you please help me with that?

joschout / tilde

bug while running tilde on other data #1