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jotech
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gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
GNU General Public License v3.0
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request, mega medium
#244
mmpust
opened
4 days ago
0
Gapfilling a model after gapseq adapt?
#243
LucoDevro
opened
1 week ago
0
draft network reconstruction fails with wrong input genome
#242
jotech
closed
1 week ago
1
Subunit detection is returning wrong numbers
#241
Porthmeus
opened
2 weeks ago
0
Include cobrar in the conda env file
#240
Unaimend
closed
3 weeks ago
4
Documentation rebuild after changes
#239
Waschina
opened
1 month ago
1
cobrar
#238
Waschina
closed
1 month ago
1
Update biochemistry DB
#237
Waschina
closed
1 month ago
0
Pull latest changes on master branch to this branch (cobrar)
#236
Waschina
closed
1 month ago
0
I can not install sybilSBML_3.1.2.tar.gz
#235
qikongwanli
closed
3 weeks ago
4
Archaea reconstruction does not predict Methanogenesis anymore
#234
cdiener
opened
2 months ago
3
Enforce minimum required growth rate in gapfill step 1
#233
Waschina
closed
3 months ago
0
Gapfilling fails in step 1
#232
cdiener
opened
3 months ago
11
Get new version changes from main branch
#231
Waschina
closed
3 months ago
1
Update gapseq version number
#230
Waschina
closed
3 months ago
0
Get latest commits from main branch
#229
Waschina
closed
3 months ago
0
Gapfilling occasionally fails silently with GLPK
#228
cdiener
closed
3 months ago
8
Gapseq returns models based on SEED reactions even when database is specified as vmh
#227
anubhavdas0907
opened
4 months ago
0
pan-Draft revision
#226
nicola-debernardini
closed
4 months ago
2
gapseq with Gurobi
#225
Brunokemon
closed
4 months ago
2
Merge pull request #221 from jotech/cobrar
#224
Waschina
closed
4 months ago
0
transporter prediction leads to a zerobytes Transporter.tbl result
#223
Lishijiagg
opened
4 months ago
2
Removed duplicate pathway in `custom_pwy.tbl`
#221
Waschina
closed
5 months ago
0
Comparison of amino acid auxotrophy prediction with GapMind
#220
mgabriell1
opened
5 months ago
3
Exploit gapfilled model for metabolic comparison
#219
mgabriell1
opened
5 months ago
5
windows installation problems
#218
Fake-star
opened
5 months ago
7
Add gapseq to bioconda
#217
cmkobel
opened
6 months ago
11
Possible inconsistencies in pathway completeness percentages.
#216
avandieren
opened
6 months ago
2
Seawater and related media
#215
lxsteiner
closed
5 months ago
1
Missing exchange reactions are not being added in the "adapt" module
#214
utkinaira
closed
7 months ago
3
Inquiry on error
#213
songmj86
opened
7 months ago
5
Inquiry on instllation
#212
songmj86
closed
7 months ago
2
adding pathways| Error: No model reactions found and Error: Error in !opt$sbml.no.output : invalid argument type
#211
wtscott31
opened
7 months ago
6
Add citation information
#210
nicola-debernardini
closed
7 months ago
1
Using seed reaction database in Adapt function
#209
jchmiel4
closed
8 months ago
8
Any plans on updating MetaCyc database?
#208
VadimDu
closed
8 months ago
2
fixed potential typo when selecting vmh database
#207
jchmiel4
closed
8 months ago
1
Pan draft
#205
nicola-debernardini
closed
8 months ago
4
subex.tbl issue
#204
maringos
closed
9 months ago
1
Could not use find-transport function using '-m' option for specific metabolite.
#203
ashish193006
closed
10 months ago
8
Diamond not used for the transport-find command
#202
Porthmeus
closed
11 months ago
2
[Request Update] [Tutorial] For anyone who intend to use CPLEX in gapseq
#201
ElderMedic
closed
11 months ago
3
CHNOSZ NOT FOUND
#200
Unaimend
closed
11 months ago
1
Reaction inferred from pseudogene regions when using gapseq on genome fasta file.
#199
ArnaudBelcour
opened
1 year ago
0
Question: GapSeq includes a protein as being present when it got a bad blast?
#198
Calvin2077
closed
12 months ago
14
libsbml and libglpk not found while installed using conda
#197
mgabriell1
closed
1 year ago
4
HTML entities for special characters in reaction name causes incorrect uniprot queries
#196
Waschina
closed
1 year ago
1
Download sequences fails
#195
pbelmann
closed
1 year ago
2
Fix doall options (issue #192)
#193
ArnaudBelcour
closed
1 year ago
2
Issue with options when calling subcommand for "gapseq doall".
#192
ArnaudBelcour
closed
1 year ago
3
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