I'm running SCALE on 55K cells and I'm getting the following warnings:
UserWarning: Numerical issues were encountered when scaling the data and might not be solved. Dataset may contain too large values. You may need to prescale your features.
and
UserWarning: Numerical issues were encountered when scaling the data and might not be solved. The standard deviation of the data is probably very close to 0.
It ultimately fails with:
ValueError: Input contains NaN, infinity or a value too large for dtype('float32').
My questions are:
1) How do you propose to pre-scale my data?
2) Do you have some diagnostics steps on why this may be?
Hi,
I'm running
SCALE
on 55K cells and I'm getting the following warnings:and
It ultimately fails with:
My questions are:
1) How do you propose to pre-scale my data?
2) Do you have some diagnostics steps on why this may be?
Thanks!